Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01640 ATGGGTGGGACAGAGAAGGAAAATTCCGGCCAAGTAACTATCCCGGGATTCTTTAGAGATGGTCGTCCGTACAAGAAGATTTTGGACTCCATGGGTCACGCTGTTCATGTATTTAGAACGACCTCTTGGGAAATCTTATACTGGAATCGCCCAGCTGAAAACCTCTATGGATGGAAGGCCTATGAAGTCATTGGACAGAGAGTTTCCGAAGTTCTCATTGCGGAAGAATACCACCCACTACTTATGAAAGTCATGGAAGGATTAAGCACAGGACAGCAATGGTCAGGTCAATTTCCTTTCAAGAAACGTTCTGGCGAAATATTTATGGCAGTGGTGACTCAATCTCCATTTTACGAGGATGGCAAGATGGTTGGCATTATAACTGTTTCAAGTGATGCAGCTTTATTCAATAGTGTAGCATCAGAAAGTCTGAGGAGATGTCAAGAAAATGCAAACAGTCAAAGAGAATGGAATTCAAACTGGAAGAATATCCCCAAGCAACAGCAGTTGCCATTTTTACCACTGGCTCAATTTGCATCATCTGTTTCCAATCTGGCCTCGAAACTTAGATTGGGGGGACAAGAAGAAGAATGCAATTCAAAAGACAAGTCTAGAGAAAAAGATAATATGGCTGCAGCTGAGTTTAAGAAACCTGTGACACTAGTGAGTGTCTTAGCAAAGCTAAACATTGGTGGTAATAGGAAGCATGGAAAAGAAGATGATAATATACAACAAGATGGTCCAACTGATACTCCATTACCCAATGATGCGGAAAAGAAGCTCCCTCGTAGAAATTTGAAGGCATCAAAGAAGTGGTATAAGGACATTTCATTCAAAACTTCTTCAAAGAACTCCAGAAAGGGTTGCAATTTAGCGATACCCGGAGATTCGTCTCCAGGTTTAGGCTCCCAAGTGGATCATAAGTTGATAAAGGATGTGAATGAGATGCATGCTTTGAACAAGGACTTTAAAGGTCAACAAAAGAGGGATATTACTCATTTTGCAACTTCTGAGGTGACCATGAACAGCCATGGAAGTACAGGAGAACAAGAATATGAGATTTGCTGGGAAGACATTCAGTTAGGGGAGGAGATTGGACGAGGTTCCAGTGCTATTGTTTATCGTGGACTCTGGAATAGATCGGACATAGCCGTTAAGGTTTACTTTGTAAACGATTATAGCGATGGGACTTTGGAGGACTACAAAAAGGAGGTTGATATAATGAAGAAACTGAGACATCCGAATGTGTTGTTGTACATGGGAGCCGTTTATTCGCCGGAAAGACACGCAATTGTCACAGAGGGAAGTCTCTTTAAAATACTTCACCAGAACAATCAAACATTGGACGTTAAAAGACGTATGAGGATGGCCCTTGATGTTGCCAGAGGAATGAATTATTTGCACCGTAGGAGTCCGCCAATCATACATAGAGATCTTAAATCTTCCAATCTGCTTGTTGATAAAATGTGGTCGGTGAAGGTTGGAGATTTTGGGCTGTCTAAATTAAAAGATGCAACATTTTTCACGACAAAATCGGGGAAAGGAACGACCCAATGGATGGCTCCTGAAATCCTTCGAAATGAACCGACCAATGAGAAATCTGACGTATACAGTTTTGGTGTCATCTTATGGGAGCTTATGACTTGCTCTGTTCCTTGGAAAAATCTCAACTCCTTACAGGTTGTTGGAGTTGTTGGCTTCATGGATAGAAGATTAGATTTACCACAAGGCCTTGACCCTCAAGTGACATCCATCATCCAAGACTGTTGGCTCAGGTACATTATACCCACTATTTTGCTCTTGCTTAACAATAATTTTTCCGAATTATCTTCCGTTTTCGCTGAAAAATTGCAGCAACCCGCTAAAGCGACCATCGTTCGAAGATATAATCTGTCAAATGACAGCAATCTTACAAAAAGTTGCGCAGCAGTAGAGGAAGTTTAA 1944 41.36 MGGTEKENSGQVTIPGFFRDGRPYKKILDSMGHAVHVFRTTSWEILYWNRPAENLYGWKAYEVIGQRVSEVLIAEEYHPLLMKVMEGLSTGQQWSGQFPFKKRSGEIFMAVVTQSPFYEDGKMVGIITVSSDAALFNSVASESLRRCQENANSQREWNSNWKNIPKQQQLPFLPLAQFASSVSNLASKLRLGGQEEECNSKDKSREKDNMAAAEFKKPVTLVSVLAKLNIGGNRKHGKEDDNIQQDGPTDTPLPNDAEKKLPRRNLKASKKWYKDISFKTSSKNSRKGCNLAIPGDSSPGLGSQVDHKLIKDVNEMHALNKDFKGQQKRDITHFATSEVTMNSHGSTGEQEYEICWEDIQLGEEIGRGSSAIVYRGLWNRSDIAVKVYFVNDYSDGTLEDYKKEVDIMKKLRHPNVLLYMGAVYSPERHAIVTEGSLFKILHQNNQTLDVKRRMRMALDVARGMNYLHRRSPPIIHRDLKSSNLLVDKMWSVKVGDFGLSKLKDATFFTTKSGKGTTQWMAPEILRNEPTNEKSDVYSFGVILWELMTCSVPWKNLNSLQVVGVVGFMDRRLDLPQGLDPQVTSIIQDCWLRYIIPTILLLLNNNFSELSSVFAEKLQQPAKATIVRRYNLSNDSNLTKSCAAVEEV 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 51999009 52003416 + Bma026937.2 Bma07g01640 86777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01640 647 PANTHER SERINE-THREONINE PROTEIN KINASE 202 591 - -
Bma07g01640 647 MobiDBLite consensus disorder prediction 232 265 - -
Bma07g01640 647 Gene3D Phosphorylase Kinase; domain 1 348 435 - -
Bma07g01640 647 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 202 591 - -
Bma07g01640 647 PANTHER SERINE-THREONINE PROTEIN KINASE 11 330 - -
Bma07g01640 647 Gene3D Transferase(Phosphotransferase) domain 1 436 601 - -
Bma07g01640 647 CDD PAS 37 132 IPR000014 -
Bma07g01640 647 Gene3D PAS domain 19 168 - -
Bma07g01640 647 ProSiteProfiles PAS repeat profile. 20 79 IPR000014 -
Bma07g01640 647 ProSiteProfiles Protein kinase domain profile. 359 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g01640 647 MobiDBLite consensus disorder prediction 281 302 - -
Bma07g01640 647 Pfam PAS fold 24 128 IPR013767 GO:0006355
Bma07g01640 647 ProSitePatterns Protein kinases ATP-binding region signature. 365 386 IPR017441 GO:0005524
Bma07g01640 647 SUPERFAMILY PYP-like sensor domain (PAS domain) 24 132 IPR035965 -
Bma07g01640 647 TIGRFAM sensory_box: PAS domain S-box protein 24 132 IPR000014 -
Bma07g01640 647 CDD STKc_MAP3K-like 365 590 - -
Bma07g01640 647 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 11 330 - -
Bma07g01640 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Bma07g01640 647 Pfam Protein tyrosine and serine/threonine kinase 359 590 IPR001245 GO:0004672|GO:0006468
Bma07g01640 647 SMART serkin_6 359 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma07g01640 647 SUPERFAMILY Protein kinase-like (PK-like) 340 591 IPR011009 -
Bma07g01640 647 SMART pas_2 22 89 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00994 Bma-Chr5:48438779 Bma07g01640 Bma-Chr7:51999009 1.62E-123 dispersed
Bma07g01640 Bma-Chr7:51999009 Bma10g00075 Bma-Chr10:773719 2.29E-88 dispersed
Bma07g01640 Bma-Chr7:51999009 Bma04g01600 Bma-Chr4:51913916 3.52E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66641 PF07714 PK_Tyr_Ser-Thr 1.40E-54 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01640 - - rcn:112178995 630.172