Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01642 ATGCCTTCCTCGGTTCTTCTGGAACGCACGAGAGCTGTTTCCAAGCTAATTTGCAGGCTTATCTTCGATCGGCCGATGGGCGGCGGTCCTCGGACCTTCCCAGGCGGTCTTAACAAGTGGCAGTGGAAGCGAATGCACGAGAAACGAGCTAAAGAAAAGGAGAGGAAGCTTCTCGATCAAGAAAAACAGATATATCAGGCACGAATTCGCTCAAACATCCGCGCTAAACTCTCTGGAAAATCTGATTCGTTGGTGGAAATGGAACTGTCAACCAGTCATGAGCCTATGAGCCCCGGTGAGCATATTAAAGCTCTAGCTAATAGGTTTATGAAAGAAGGAGCTATAGATTTGTGGAACGAGTCCGATGGTCCTTTAACTATGTCGGAAGGACAAAATTTCATTGAATCAAGTGGGCGGAGTAGATCGATTTCATCACCTATTGACGGGAGAAAATTGATTTATGAGAAACGTCATGATTTAAGAAACTACGAGAATCTGAATTTAGGAAAATTAAATGCCAACTACGTGAAAGGTAGGAGTTACTCTGTGCAAAGTCGGAGAAGATTTCCTAGAAATGAGAGTTCTTCAAGTGATGATGAAGAGGATTATGGCTTAGAGGTCGACTCTGTAAAGGCAAGTGACTCTGAGGGATCAAGAAATGGTAACGATGTGAGAATCGGGGGCAAAGGTTCCTTAGGAAAGTATGATATTAAGACAAAGAGGAGGGTGATGCCGAAGCCATACGATGAGGAGAGTGATTTTGCAGAGCAGATTGAGCTCATTAGGCATGAATTAAGTAAAAAAAATGCAGCTGAAAACCAAGAAGAACGGCGTGAGGAGTCAATTTTTACAGAAAAAAGATTCGATGAATGCGCCATATCTCCATTAACGGTCAAGGCACTCTCCTCTACTGGCTATCTTCAAATGACTCGTGTACAAGAGGCCAGTCTTCCTATTTTCCTTGAGGGCAAGGATGCATTGGTCAAAGCTAAAACTGGCACAGGGAAAAGTGCAGCCTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAGGCTATGAGTAGCAGTACTAATGTGAGGGGTCCTCCAATATATGTTCTAATTATTTGCCCTACTAGAGAACTCGCAAGTCAAATAGCTGCCGAAGCAAATGTTTTGCTTAAGTATCATGAAGGCATAGGAGTGCAGACTCTTGTCGGGGGAACGCGATTTAAAGATGATCAGAAACGGCTTGAATCGAATCTTAGCCAGATAATAGTTGCCACTCCTGGTAGGTTGCTGGACCATGTCGAGAGTAGATCTTCTCTGTCTGTGCGTTTGATGGCATTGAAAATGCTCATACTTGATGAAGCTGACCTTCTATTGGACTTGGGTTTTCGAAAGGACATGGAGAGAATTGTTGATTGTCTGCCTCGCCAGCGGCAGTCACTCCTCTTTTCTGCTACTATTCCAAAGGAGGTACGAAGAATATCTCAGCTTGTTTTGAAAAGGGAACATGTTTATTTGGATACCGTTGGACTTGGTTGTGTTGAAACTCATTTTAAGGTCAAACAATCCTATCTAATTGCACCGCATGAATTGCATTTTCAAATTGTGTACCATCTTCTGAAAGAACATACCTTACAAATGCCAGATTACAAGATTATTGTTTTTTGCACAACTGGGATGGTGACATCACTCATGTTTATACTTTTACGAGAGATGAAAATGAATGTTAGAGAGATCCATTCAAGAAAACCTCAACTTTACCGAACTCGTATTTCCGAGGAATTCAAGCAGTCAAACCGGCTGATTCTAGTTACATCTGATGTTTCAGCACGTGGAATGAATTATCCTGATGTTACTTTGGTCATACAGATGGGTATTCCATCTGATAGGGAGCAGTATATACATAGGCTTGGTCGAACAGGACGGGAAGGCAAAGAAGGGGAGGGCATTCTGTTAATTGCACCATGGGAAGAATATTTCTTATCAGAACTGCAAAATCTGCCTCTCGAGACACTTCATGTACCGCCCATGGACTTGGATTCAAAACTCAAGATTGAGAATTCAATGGCGAAAATTGATAGTAGCATAAAAGAGGGGGCATATCATGCCTGGCTTGGCTATTACAACTCAATAAGAGAAATTGGCAGAGATAAAACAACACTAGTTGAGCTCGCAAACAAATTTTCCAATTCAATTGGGTTGCAAAAGCCGCCTTCTCTGTTTCGGAAGACGGCAGTAAAGATGGGTTTGAGAGATATTCCTGGCATAAAACTCCGGAAGTAG 2268 42.37 MPSSVLLERTRAVSKLICRLIFDRPMGGGPRTFPGGLNKWQWKRMHEKRAKEKERKLLDQEKQIYQARIRSNIRAKLSGKSDSLVEMELSTSHEPMSPGEHIKALANRFMKEGAIDLWNESDGPLTMSEGQNFIESSGRSRSISSPIDGRKLIYEKRHDLRNYENLNLGKLNANYVKGRSYSVQSRRRFPRNESSSSDDEEDYGLEVDSVKASDSEGSRNGNDVRIGGKGSLGKYDIKTKRRVMPKPYDEESDFAEQIELIRHELSKKNAAENQEERREESIFTEKRFDECAISPLTVKALSSTGYLQMTRVQEASLPIFLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMSSSTNVRGPPIYVLIICPTRELASQIAAEANVLLKYHEGIGVQTLVGGTRFKDDQKRLESNLSQIIVATPGRLLDHVESRSSLSVRLMALKMLILDEADLLLDLGFRKDMERIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHVYLDTVGLGCVETHFKVKQSYLIAPHELHFQIVYHLLKEHTLQMPDYKIIVFCTTGMVTSLMFILLREMKMNVREIHSRKPQLYRTRISEEFKQSNRLILVTSDVSARGMNYPDVTLVIQMGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLSELQNLPLETLHVPPMDLDSKLKIENSMAKIDSSIKEGAYHAWLGYYNSIREIGRDKTTLVELANKFSNSIGLQKPPSLFRKTAVKMGLRDIPGIKLRK 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 52009572 52013793 - Bma026938.1 Bma07g01642 86779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01642 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 684 IPR001650 -
Bma07g01642 755 Pfam DEAD/DEAH box helicase 310 488 IPR011545 GO:0003676|GO:0005524
Bma07g01642 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 500 IPR014001 -
Bma07g01642 755 PANTHER RNA HELICASE 29 754 - -
Bma07g01642 755 SMART ultradead3 305 518 IPR014001 -
Bma07g01642 755 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 754 - -
Bma07g01642 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 286 314 IPR014014 GO:0003724
Bma07g01642 755 Coils Coil 43 68 - -
Bma07g01642 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 656 IPR027417 -
Bma07g01642 755 CDD SF2_C_DEAD 515 648 - -
Bma07g01642 755 Pfam Helicase conserved C-terminal domain 530 638 IPR001650 -
Bma07g01642 755 Gene3D - 509 738 IPR027417 -
Bma07g01642 755 Gene3D - 263 502 IPR027417 -
Bma07g01642 755 MobiDBLite consensus disorder prediction 182 231 - -
Bma07g01642 755 SMART helicmild6 558 639 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01642 - - - pper:18777027 1008.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01848 Bma-Chr1:66791113 Bma07g01642 Bma-Chr7:52009572 7.40E-22 dispersed
Bma01g01850 Bma-Chr1:66879706 Bma07g01642 Bma-Chr7:52009572 6.75E-22 dispersed
Bma07g00791 Bma-Chr7:23571457 Bma07g01642 Bma-Chr7:52009572 4.72E-53 dispersed
Bma07g01642 Bma-Chr7:52009572 Bma07g00446 Bma-Chr7:5422495 1.01E-53 dispersed
Bma07g01642 Bma-Chr7:52009572 Bma06g00006 Bma-Chr6:207829 5.98E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g359 . . . . . . Bma07g01642 . . . Cma02g01094 . . Car15g01094 . . Cpe05g00622 . . . . . . . . . . . . . . . . . . . . . . . Blo19g00316 . Bda09g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007400 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 3 1 36