Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01647 ATGGCCACCCAATCCCAGACTTCAGTCCACGATTTCGTCGTCAAGGACGCTAGAGGAAATGATGTCGATCTCAGTTCTTACAAAGGAAAGGTCCTCTTGATCGTCAATGTTGCCTCTCAATGTGGCTTGACCAATTCAAATTACAAAGAACTGAGTCAATTGTACGAAAAAAACAAAAATCAAGGACTGGAGATTCTGGCATTTCCATGCAACCAATTTGGAGGCCAAGAGCCAGGGAGTAACGAACAGATAGTGGAGTTTGCTTGTACTCGCTTTAAGGCAGAGTATCCCATCTTTGATAAGGTGGATGTGAATGGCGAGAAAGCTGCTCCACTGTACAAGTTCTTGAAATCGAGCAAAGGTGGGTGGCTTGGAGACGGCATCAAGTGGAATTTCTCTAAGTTCCTGGTGGACAAAGACGGGATGGTCGTCAACCGATATGCTCCAACAACGTCCCCGCTTAGCATTGAGAAGGATATAAAGAAGCTGCTTTGA 495 45.45 MATQSQTSVHDFVVKDARGNDVDLSSYKGKVLLIVNVASQCGLTNSNYKELSQLYEKNKNQGLEILAFPCNQFGGQEPGSNEQIVEFACTRFKAEYPIFDKVDVNGEKAAPLYKFLKSSKGGWLGDGIKWNFSKFLVDKDGMVVNRYAPTTSPLSIEKDIKKLL 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 52071609 52072895 - Bma026945.1 Bma07g01647 86784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01647 164 Gene3D Glutaredoxin 1 164 - -
Bma07g01647 164 ProSiteProfiles Thioredoxin domain profile. 3 164 IPR013766 -
Bma07g01647 164 ProSitePatterns Glutathione peroxidases active site. 29 44 IPR029759 -
Bma07g01647 164 CDD GSH_Peroxidase 8 160 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 PANTHER GLUTATHIONE PEROXIDASE 1 164 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 PIRSF Glutathion_perox 1 164 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 ProSitePatterns Glutathione peroxidases signature 2. 66 73 IPR029760 -
Bma07g01647 164 ProSiteProfiles Glutathione peroxidase profile. 1 164 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 SUPERFAMILY Thioredoxin-like 8 164 IPR036249 -
Bma07g01647 164 PANTHER GLUTATHIONE PEROXIDASE 1 164 - -
Bma07g01647 164 PRINTS Glutathione peroxidase family signature 27 44 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 PRINTS Glutathione peroxidase family signature 128 137 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 PRINTS Glutathione peroxidase family signature 63 79 IPR000889 GO:0004602|GO:0006979
Bma07g01647 164 Pfam Glutathione peroxidase 9 117 IPR000889 GO:0004602|GO:0006979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01647 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - aof:109826840 297.745
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01647 Bma12g00393 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01422 Bma-Chr6:50958728 Bma07g01647 Bma-Chr7:52071609 3.90E-83 dispersed
Bma07g01647 Bma-Chr7:52071609 Bma09g00698 Bma-Chr9:45079313 3.06E-76 dispersed
Bma04g00099 Bma-Chr4:797781 Bma07g01647 Bma-Chr7:52071609 7.30E-87 transposed
Bma14g00593 Bma-Chr14:6432297 Bma07g01647 Bma-Chr7:52071609 2.57E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g330 . . . . . . Bma07g01647 . . . Cma02g01460 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0773 Cone9ag0779 . Csa05g00289 Chy09g01217 . . Blo19g00321 . Bda09g00042 . . . Bma12g00393 . Cmo02g01495 . . . . . . . Bhi12g00245 . . . . . . . . . . . . . Lsi09g00266 . . Cme09g01754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198