Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01660 ATGGGGTTTCCGGTGGGCTACACGGAGCTTCTTCTCCCTAACCTCTTCCTCCATACTCTCTCCGTACTGGGTTTTCTCAGGAAGTTCATCTCTGGTCTCTTGCGCTTTATTGGCCTCTGCGAGTTTCTCGAACCAGACTTTTCCTGGTCGCAGCCCTACCGAATCGTCCCCACCCGTTTCCACGACTCAGATTCCATCTCTCCTGTTCTGATCCAAGAATTTCTCCCCGTCGCTAAGTTCTCTGATCTCGTTCACCCGCCGGAAAGCTGCGCCGTTTGCCTCTACGAGTTCGAGACGGAGGACGAGATCCGGCGCCTTACGAATTGCCGTCACATATTCCACAAAGGCTGCGTCGATCGATGGATGTGTTATGAGCAGAAGACTTGTCCGCTCTGTCGAACCCCGTTCATTCCGCCGGATTTGCTCGGCGGTGGGGATGACCGGCCGTCTGAAACAGCCGAATCGCACATACCTGCTGGTTTGCAGCTTCATAGATTTGACTTTCTTTAG 510 53.73 MGFPVGYTELLLPNLFLHTLSVLGFLRKFISGLLRFIGLCEFLEPDFSWSQPYRIVPTRFHDSDSISPVLIQEFLPVAKFSDLVHPPESCAVCLYEFETEDEIRRLTNCRHIFHKGCVDRWMCYEQKTCPLCRTPFIPPDLLGGGDDRPSETAESHIPAGLQLHRFDFL 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 52185047 52185556 + Bma026956.1 Bma07g01660 86797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01660 169 Pfam Ring finger domain 89 133 IPR001841 -
Bma07g01660 169 PANTHER BRH1 RING FINGER PROTEIN 1 146 - -
Bma07g01660 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 137 IPR013083 -
Bma07g01660 169 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Bma07g01660 169 SUPERFAMILY RING/U-box 69 139 - -
Bma07g01660 169 CDD RING-H2 90 133 - -
Bma07g01660 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 146 - -
Bma07g01660 169 SMART ring_2 90 132 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01660 Bma-Chr7:52185047 Bma09g00051 Bma-Chr9:1190164 1.74E-15 dispersed
Bma14g00604 Bma-Chr14:6570856 Bma07g01660 Bma-Chr7:52185047 2.46E-88 wgd
Bma05g00824 Bma-Chr5:45587291 Bma07g01660 Bma-Chr7:52185047 1.11E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01660 K16281 - jre:109014495 228.794