Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma07g01667 CAGAAGGCTAAACAAGGTAGCAGAAGGTTAATTTGTTCAGTCGCCGCAGATACGTTGCCCAAGAAAATTGAAGAATTTGAAATGGATGCACATAAGGAAATATTTTTGAAGGATTATAAGATGCCTGATTACTACTTTGATACAGTGGATTTAAATTTTTCGCTTGGCGAGGAGAAAACAATTGTTAGTTCCAGAATAACAGTGACACCCCGAGTTGAAGGTTCTACTTCTCCTCTGGTTTTGGATGGACAAGAAGTGAAGTTGCTTTCAATTAAAGTCAACAATACAGAGCTTAAGGAGGATGATTACCGATTGGACTCACGCCATCTGAGACTTCTGTCACCACCATCTGGCCCATTTACTTTAGAAATTGTTAATGAGCTATTGCCTCAGAAGAACACATCATTAGAGGGACTTTACAAGTCTTCTGGTAATTTTTGCACACAATGTGAAGCGGAAGGCTTCCGTAAAATCACATTTTATCAGCAGGATCGCCCTGATATAATGGCAAAGTACACCTGTCGCATTGAAGCAGATAAGGAGTTATATCCAGTACTTCTCTCGAATGGAAATCTCGTGGATCATGGCGATTTAGAAGGTGGAAGACAATATGTTGTTTGGGAGGATCCTTTTAAAAAACCATGCTATTTGTTTGCTTTAGTTGCTGGACAATTGGTCAGCAGAGATGATGTTTTCATTACAAGATCAGGCAGAAAGGTCTCTCTACGGATATGGACCCCAGCTCAAGATCTGCCCAAGACTGCACATGCCATGTATTCACTTAAGGCGGCTATGAAATGGGATGAGGATGTTTTTGGTCTAGAATATGACCTGGACCTTTTCAATATAGTGGCTGTTCCCGATTTTGACATGGGAGCAATGGAAAACAAGAGTTTGAATATCTTCAATTCAAAACTCGTCTTGGCCTCACCAGAAACGGCTACAGATGCAGATTATGCTGCAATATTAGGTGTTATTGGTCATGAGTATTTCCACAACTGGACTGGCAACAGGTTAGTGACCTGTCGTGACTGGTTCCAGCTAAGTTTAAAGGAAGGTCTTACAGTTTTTCGCGATCAGGAATTCTCGTCTGACATGGGAAGTCAAACTGTAGAGCGGATTGCTCATGTTTCAAAACTTCGAAATTATCAGTTTCCACAGGATGCTGGCCCCATGGCTCATCCAGTTAGGCCACATTCATATATTAAGGTTAGCAATTACTTATTTTTGTATAATTACGGAATGGATCTATACTTCAAGAGACATGATGGTCAAGCTGTAACCTGTGAAGACTTTTTTGCAGCCATGCGAGATGCAAATAATGCAGATTTTGCTAACTTCTTGCAATGGTTTCTAACTTGTAGGTACTCTCAAGCTGGGACACCTCTTGTCAAAGTGACTTCATCTTACGACTCTGAAGCTCATACTTTCTCTTTAAAGTTTAGTCAAGTGGTGCCGCCAACCCCTGGGCAGCCAGTTAAAGAACCGATGTTTATACCAGTGGCTTTAGGCTTGCTAGATTCAAAGGGCAAGGACCTGCCTCTTTCCTCTGTCTATCATGATGGGATGCTGCAGTTGGTTTCTGGCAATGATCAGCCAGTTTATTCTACAGTGCTTCGGGTGACCAAAAAAGAAGAAGAATTTGTATTTTCTGATGTACCTGAGCGGCCAGTTCCGTCGCTGTTGCGGGGTTATAGTGCTCCTATCCGTCTCGAATCAGATCTAAGCGACAGTGACCTATTTTTCCTTCTTGCCCATGATTCAGACGAGTTTAATCGGTGGGAGGCAGGACAAATACTGGCTCGAAAGTTGATGCTCGGCTTGGTGGCTGACTTCCAACAAAATAAGCCATTGACGCTTAATTCAAAGTTTGTGAATGGGATGAGAAGCATACTCTGTGACTCAAGCTTAGATAAAGAGTTCATTGCAAAGGCAATAACTCTACCTGGTGAAGGAGAAGTAATGGACATGATGGACATTGCAGATCCTGATGCAGTCCATGCCGTTCGATCATTCATACGGAAGCAGCTAGCTTGTGAGCTGAAAGCGGAGCTTCTTTCCACTGTCGAAAAGAACAGAAGCTCGGAACAGTATGAGTTTAACCATGCTGACATGGCTAGACGCGCCCTTAAAAATACGGCATTGTCTTATCTTGCATTGCTTGAAGAGGCGGAATTTGCAGATCTGGCTCTTCACGAGTACAAAACGGCCACAAATATGACTGAACAATTTTCAGCTTTAGCCGCCATAGCCCAGAATCCGTGTAAAACCCGTGATGATGTTCTAGCCGATTTCTATGACAAGTGGCAGCATGACTTTTTAGTTGTGAACAAATGGTTTGCTCTTCAAGCCATGTCTGACATTCCTGGAAATGTAGAACATGTTGGGAAGCTCCTCAACCACCCAGCTTTTGATCTGCGAAATCCGAACAATGTATACTCCCTCATTGGAGGTTTTCGTGGGTCCCCAGTGAATTTCCATGCAAAGGATGGATCAGGCTATAAGTTTTTGGGAGAGAAAGTTCTTCAACTTGACAAAATAAATCCTCAAGTTGCATCCCGAATGGTCTCCGCATTCTCAAGATGGAAACGATACGACGAGACCCGACAAAAACTGGCAAAGGCACAGCTTGAGATGATAATGGCTTCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCCTCCAAAAGTTTAGCTGCTTAA 2703 42.69 QKAKQGSRRLICSVAADTLPKKIEEFEMDAHKEIFLKDYKMPDYYFDTVDLNFSLGEEKTIVSSRITVTPRVEGSTSPLVLDGQEVKLLSIKVNNTELKEDDYRLDSRHLRLLSPPSGPFTLEIVNELLPQKNTSLEGLYKSSGNFCTQCEAEGFRKITFYQQDRPDIMAKYTCRIEADKELYPVLLSNGNLVDHGDLEGGRQYVVWEDPFKKPCYLFALVAGQLVSRDDVFITRSGRKVSLRIWTPAQDLPKTAHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFDMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIGHEYFHNWTGNRLVTCRDWFQLSLKEGLTVFRDQEFSSDMGSQTVERIAHVSKLRNYQFPQDAGPMAHPVRPHSYIKVSNYLFLYNYGMDLYFKRHDGQAVTCEDFFAAMRDANNADFANFLQWFLTCRYSQAGTPLVKVTSSYDSEAHTFSLKFSQVVPPTPGQPVKEPMFIPVALGLLDSKGKDLPLSSVYHDGMLQLVSGNDQPVYSTVLRVTKKEEEFVFSDVPERPVPSLLRGYSAPIRLESDLSDSDLFFLLAHDSDEFNRWEAGQILARKLMLGLVADFQQNKPLTLNSKFVNGMRSILCDSSLDKEFIAKAITLPGEGEVMDMMDIADPDAVHAVRSFIRKQLACELKAELLSTVEKNRSSEQYEFNHADMARRALKNTALSYLALLEEAEFADLALHEYKTATNMTEQFSALAAIAQNPCKTRDDVLADFYDKWQHDFLVVNKWFALQAMSDIPGNVEHVGKLLNHPAFDLRNPNNVYSLIGGFRGSPVNFHAKDGSGYKFLGEKVLQLDKINPQVASRMVSAFSRWKRYDETRQKLAKAQLEMIMASNGLSENVFEIASKSLAA 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 52253858 52260022 + Bma026964.1 Bma07g01667 86804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma07g01667 900 PANTHER BNAC06G01820D PROTEIN 3 408 - -
Bma07g01667 900 Pfam Domain of unknown function (DUF3458) Ig-like fold 460 573 IPR035414 -
Bma07g01667 900 Pfam Domain of unknown function (DUF3458_C) ARM repeats 577 899 IPR024601 -
Bma07g01667 900 Gene3D tricorn interacting facor f3 domain 41 225 IPR042097 -
Bma07g01667 900 PANTHER - 3 408 IPR012779 GO:0008270
Bma07g01667 900 TIGRFAM pepN_proteo: aminopeptidase N 38 898 IPR012779 GO:0008270
Bma07g01667 900 Gene3D - 575 899 IPR037144 -
Bma07g01667 900 PANTHER - 412 900 IPR012779 GO:0008270
Bma07g01667 900 Gene3D - 460 573 IPR038438 -
Bma07g01667 900 PANTHER BNAC06G01820D PROTEIN 412 900 - -
Bma07g01667 900 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 33 223 IPR042097 -
Bma07g01667 900 Gene3D - 227 310 - -
Bma07g01667 900 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 235 466 - -
Bma07g01667 900 Pfam Peptidase M1 N-terminal domain 42 217 IPR045357 -
Bma07g01667 900 Gene3D Neutral Protease Domain 2 413 452 IPR027268 -
Bma07g01667 900 Gene3D Neutral Protease Domain 2 311 412 IPR027268 -
Bma07g01667 900 CDD M1_APN 38 451 - -
Bma07g01667 900 Pfam Peptidase family M1 domain 259 397 IPR014782 GO:0008237|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma07g01667 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - tcc:18606548 1490.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00098 Bma-Chr3:812526 Bma07g01667 Bma-Chr7:52253858 8.78E-07 dispersed
Bma07g01666 Bma-Chr7:52235690 Bma07g01667 Bma-Chr7:52253858 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g301 . . . . . . Bma07g01667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00268 . . . . . Bda09g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42