Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00004 ATGTCTGTTGTTACTGAAAGTTCTGTAATGGAGGAGCGAATTAGATTGAGAAGACCCAGAAATCACTGCAGTCAACCCATTTCTGAACCAGATCCAAACCCTTCTGTACAATCCACGTCTGAAATCCAGTCCACCCGCGGGAAATCCACCATTTCTTCTCTTTTTCTCTCTACCTTCTCAAACACACCCAATGAAACCCTATCAACTTCTATTAATATTAGTAAGAAGAAGAACAACTTCTCCTCTGGGACCTTCAAGGGTCTGGGCTGCGCTGCTTCCGGATCTCAGCAAGTGTTGGTGCCGGCAGTTAGCCGGACGTCGGCCGATTTGCAGACAAGGAAGATGAAGAAAAAGCTAAACAAGTACCCAAGGAAAACCCGTCAAGAAATTACTGAAGGGTCTAATTTCATTTCAAATTCTTCCTTTAATTCTACGAGTTGTATTGATGTTCAAGATGTCTGGTGTGGCCGAGGAATTGGGTTCTCTGTGGATGCTGCTGATTCAGTTGATTGTGTTGTCGCCAGAAGAAGTTTGCACAGAAGGGGCACCATTGGAGGTGTATTAACTAGCCAGAGAGAGCGGCCTTGTCCGACAAGAAGAGCACTCAATTCCGAAATCTTCTCATTCGTTGATTCTGACTCTGAAATTACTGCAACCTCGCACCAATCTGACGTTTTTGAAACTACGGAAGCTCATAACGTTGAAACTCCGTCCCCTGCAAGAATTATTGAGGTATGTTTATCTTCTTCCAAGCTGCTGATGCATGGGAGATCTAACGTACACGATCAATTCAGAGACTTGAGACTCGACATTGATAACATGTCGTACGAGGAACTCCTCGAGCTTGGCGACACGATTGGTTATGTCAATACCGGGTTGCAGGAAGAAGAAATCAGCCGTTGCTTGAGGAAAACTAAAACCATCAACGCACACGATTTTTCGTCGATCTTTTCTTTAATACAAGATAGAAAGTGCAGCATTTGTCAAGCAAGCGAAGAATATGAATCAGACGACGAAACGGGAAAGTTGAAATGTGGACATAGCTATCACGTCGAGTGCATAGAGCAATGGCTCGCTCGGAAAAACGCTTGCCCCGTTTGTAAAATTGCTCCGATGGATCGACACTAA 1128 44.41 MSVVTESSVMEERIRLRRPRNHCSQPISEPDPNPSVQSTSEIQSTRGKSTISSLFLSTFSNTPNETLSTSINISKKKNNFSSGTFKGLGCAASGSQQVLVPAVSRTSADLQTRKMKKKLNKYPRKTRQEITEGSNFISNSSFNSTSCIDVQDVWCGRGIGFSVDAADSVDCVVARRSLHRRGTIGGVLTSQRERPCPTRRALNSEIFSFVDSDSEITATSHQSDVFETTEAHNVETPSPARIIEVCLSSSKLLMHGRSNVHDQFRDLRLDIDNMSYEELLELGDTIGYVNTGLQEEEISRCLRKTKTINAHDFSSIFSLIQDRKCSICQASEEYESDDETGKLKCGHSYHVECIEQWLARKNACPVCKIAPMDRH 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 94838 97206 + Bma026994.1 Bma08g00004 86831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00004 375 Pfam Ring finger domain 324 368 IPR001841 -
Bma08g00004 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 8 369 IPR045191 GO:0061630
Bma08g00004 375 SUPERFAMILY RING/U-box 319 369 - -
Bma08g00004 375 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 8 369 - -
Bma08g00004 375 SMART ring_2 325 367 IPR001841 -
Bma08g00004 375 MobiDBLite consensus disorder prediction 26 44 - -
Bma08g00004 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 372 IPR013083 -
Bma08g00004 375 MobiDBLite consensus disorder prediction 1 44 - -
Bma08g00004 375 MobiDBLite consensus disorder prediction 10 24 - -
Bma08g00004 375 ProSiteProfiles Zinc finger RING-type profile. 325 368 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00004 - - - bhj:120083032 370.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00053 Bma08g00004 CCT
Bma06g00053 Bma08g00004 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00053 Bma-Chr6:856216 Bma08g00004 Bma-Chr8:94838 6.79E-132 dispersed
Bma08g00004 Bma-Chr8:94838 Bma01g02125 Bma-Chr1:77736610 1.03E-28 dispersed
Bma08g00004 Bma-Chr8:94838 Bma08g00043 Bma-Chr8:620757 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g278 . . . . Bpe12g00707 Bpe13g00364 Bma06g00053 . Cmo13g01045 Cmo18g00042 . . . . . Cpe20g00137 . . . . . . . . . . . . . . . . . Cone13ag0314 . Lsi02g00212 Csa01g00694 Chy12g01417 Cme12g01853 Blo13g00184 . Bda11g01777 . . . . Bma08g00004 . . . Cma13g01007 Cma18g00052 Car13g00842 Car18g00045 Cpe09g01128 . Bhi08g01262 . . Lac10g0265 . . . Cla04g01070 Cam04g1114 Cec01g1628 Cco01g1674 Clacu04g1140 Cmu04g1122 Cre01g1423 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004518 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00004 Bma_Chr08 FPKM 17.377777 20.515938 10.380074 9.078076 15.033556 10.121062 11.183431 11.76461 15.108422 14.215177