Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00006 ACCACCCGCATGGCTTACGGGTCTATTTTGCAGGGCTGTTTCAGTTCAACCATGTCCATGTCTCTTAGACCCACTTCGCCCTTTCGATTCCGCAGACCGCCTAAAGGTTTAGAACCTTTATTTCGCTACCTTACCCTGAAGAACAGCCAACCACTAGGGTTAAGGAACTTCCATGATCGCTCGCGTTTGACGCCGGGGGTATGGTGTTTTAGTTCTTCTAGAGAAATGGTAGAGGGGAAGGAAAAACAGCTGAATTTGGTTCGTTGGAGGCATAGAAGTGTTGCGTTTCCATTTTCGCAGTACCTTCAAAGCTCTAATTATGGGCGGTTTGCTTATCAAGATGCGTCCAGTGATGAATCGGATTACGAAATGGGGTCTCCTCAGCAACAAATGGGGGCATCAACCCTTGATAATATTGATGAATGGAGGTGGAAGTTAACTATGCTTCTTCGCAACAACGAGGAAAAAGAGATTGTTTCAAGGGAGAAGAAAGATATACGTGATTTTGAGCATCTTTCTGCAATAGCAACAAGAATGGGTTTGCATAGTCGACAATATTCTAAAGTAGTAGCCTTTAGTAAAGATCCTCTTCCGAATTATCGGCCAGATTTGGATGATAGGCGGCCACAAAGAGAGGTGGTATTACTTTTTGGGCTTCAAAGAGATGTCGATGCTCATCTCAACTTATACCTTTCTAAAAAATCTATGTCTAAGAGTATAGGAAGCTTTTCAGACGATCCTTGGTCCATACATGGCATTGGTGGAAATACTGCTTCTAATAATGTGCAGCAGGAGCCATCAACTACAAATAATATATTCAGGGAGAAGTTTCTTCAACGCATAAGTTTGCAAATGCGAAATCAGCAACAGAACTGGCAGGATTCTCCCGAAGGCCAAAAGATGGATGAATTTCGTAGAAGTCTCCCTGCATTCAAGGAGAAGGATATGCTGTTGAAAGCCGTTGCAGAAAACCAGGTGGTTGTTGTCTCTGGTGAAACTGGCTGTGGCAAAACGACTCAACTTCCCCAATATATTCTAGAATCGGAAATTAATGCTGCCCGTGGAGCTTTGTGTAGCATAATTTGTACCCAGCCAAGACGAATATCAGCGATGTCTGCATCTGAAAGAGTTGCTGCAGAGCGTGGAGAAAAACTGGGAGAATCTGTTGGTTACAAAGTTCGATTGGAAGGAATTAAAGGGAAGGATACCCGTCTTCTGTTTTGCACCACCGGTGTATTATTGAGGAGATTACTCGTTGACAGAAATTTAAAAGGTGTTACTCATGTTATTGTTGATGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTTCTGATTGTACTGAAGGATCTTCTACCTCGTCGACCTGAGTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCAGAGCTTTTCTCTTCTTATTTTGGTGGTGCTCCTAAAATCCATATTCCTGGTTTTACACATCCTGTGCGAGCCCACTTTTTGGAGAATATCCTGGAAATGACGGGCTATCGTTTGACACCCTATAATCAAATTGATGACTATGGTCAAGAAAAGGTTTGGAAAATGCAGAAACAAACTCAATCTCTTAAAAGAAGGAAGAGCACAATAGCTTCTTCCATTGAGGATGCGCTAGAGACTGCTGATTTTAATGGATATAGCACTGGTACTCGCGAGTCTCTATCCTGCTGGAATCCTGATTCCATTGGTTTTAACTTGATCGAGCATGTTCTTTGTTACATAAGCAAGAAAGAAAGGCCTGGTGCAATTTTGGTATTTATGACTGGTTGGGACGACATAAACTGTTTAAAGGATCAGCTCCAATCTCACCCCTTGTTGGGAGATCCTAGCAGAGTTTTGCTGCTTGCATGCCATGGTTCTATGGCCAGCTCTGAGCAGAGGTTAATATTTGATAAGCCTGAAGATGGAATACGGAAAATAGTCCTAGCGACCAACATGGCTGAGACTAGTATCACCATCAATGATGTGGTTTTTGTAGTTGATTGTGGAAAAGCAAAGGAAACATCATATGATGCACTGAATAACACTCCTTGTTTGCTTCCATCTTGGATATCAAAGGCTGCAGCACGACAAAGAAAAGGAAGAGCTGGACGGGTTCAACCTGGCGAGGCTTTTCATCTGTACCCAAGATGTGTATATGATGCTTTTTCTGATTATCAATTACCAGAACTTTTGAGAACGCCATTACAGTCTTTGTGTTTGCAAATCAAAAGTCTGCAACTAGGAAGTATTTCAGAGTTTCTAGCGAAGGCATTGCAGTCACCTGAACCTTTATCGGTTCAAAATGCTGTTGAGTATTTGAAAACTATCGGAGCATTTGACGAGAAAGAGAATCTGACAGTGCTAGGTCGCCACTTATCAATGCTTCCAGTGGAACCTAAGCTTGGAAAAATGCTCGTGTATGGAGCTATTTTCAACTGTCTAGATCCAATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCTTTCCTAATGCCATTCGACAAGAAGGACCTTGCGGAGTCGGCAAAATCTCAATTTGCAGGTCGTTCGTGTAGTGACCATATTGCGCTTGTGAGAGCTTATGAGGGTTGGAAAGATGCTGAAATGCGGCAATCTGGTTTTGAGTATTGTTGGAGAAATTTCCTTTCTGCTCAAACTCTAAAAGCCATAGATTCTTTGAGAAAACAGTTCTTTTTTTTGCTTAAGGATGCCGGTTTGATTGATAATACTTCTCAAAACTACAACATGTGGGGCCATGATGAACATCTAATCCGTGCAGTTGTCTGTGCGGGGCTTTTCCCAGGAATATGCTCCGTTGTGAACAAAGAGAAGTCGATAGCATTGAAAACGATGGAGGATGGTCAAGTTCTTCTATATTCTAGTTCTGTGAATTCATCGATACCCAAAATTCCATACCCGTGGCTCGTGTTTAACGATAAAGTGAAAGTGAATTCTGTTTTCCTTCGGGACTCTGCTGGCGTGTCGGATTCTGTTCTACTTTTGTTTGGGGGTAGCATTTCCAGTGGCGGACTAGATGGGCACCTTAAAATGCTGGAAGGATACTTGGAGTTTTTTATGAAACCTGATTTGGCTGAAACTTATTTGAGTTTAAAAAGAGAACTGGAGGAATTGATTCACAAAAAGCTTCTGAATCCGAAGTTAGATTTACAGTCGCATGTTGAGCTTCTGTCTGCAGTGAGGTTGCTAATCTCAGAGGATCAATGTGAAGGTAGATTTGTTTTTGGTCGAAAGGCATCATTACCGTCAACTAAGGCTTCAAAGGAGAGACAATCTGGGGGCGGTGGAGATAACTATAAAAATGAGCTTCAGACAGTTCTTGCAAGAGCAGGACATGAAATTCCCACTTATAAGACAAGACAACTAAAAAAGAACCAGTTTCGATCTACAGTTATCTTCAATGGTTTAGATTTTGTTGGCCAGCCCTGTAGTAACAAGAAACTTGCAGAAAAGGAGGCAGCAGGTGTGGCGTTGCAATGGCTGAAGGGCGAGACTCATTCACCTTCGCAAGATATTGGCAACGTCTCTCTAATTTTAAAGCCGAGCAAAAATAAATCAACAAAGGCTTCTACTCGTGGTGCCAAATGGAGTTAA 3621 42.06 TTRMAYGSILQGCFSSTMSMSLRPTSPFRFRRPPKGLEPLFRYLTLKNSQPLGLRNFHDRSRLTPGVWCFSSSREMVEGKEKQLNLVRWRHRSVAFPFSQYLQSSNYGRFAYQDASSDESDYEMGSPQQQMGASTLDNIDEWRWKLTMLLRNNEEKEIVSREKKDIRDFEHLSAIATRMGLHSRQYSKVVAFSKDPLPNYRPDLDDRRPQREVVLLFGLQRDVDAHLNLYLSKKSMSKSIGSFSDDPWSIHGIGGNTASNNVQQEPSTTNNIFREKFLQRISLQMRNQQQNWQDSPEGQKMDEFRRSLPAFKEKDMLLKAVAENQVVVVSGETGCGKTTQLPQYILESEINAARGALCSIICTQPRRISAMSASERVAAERGEKLGESVGYKVRLEGIKGKDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPKIHIPGFTHPVRAHFLENILEMTGYRLTPYNQIDDYGQEKVWKMQKQTQSLKRRKSTIASSIEDALETADFNGYSTGTRESLSCWNPDSIGFNLIEHVLCYISKKERPGAILVFMTGWDDINCLKDQLQSHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGEAFHLYPRCVYDAFSDYQLPELLRTPLQSLCLQIKSLQLGSISEFLAKALQSPEPLSVQNAVEYLKTIGAFDEKENLTVLGRHLSMLPVEPKLGKMLVYGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKSQFAGRSCSDHIALVRAYEGWKDAEMRQSGFEYCWRNFLSAQTLKAIDSLRKQFFFLLKDAGLIDNTSQNYNMWGHDEHLIRAVVCAGLFPGICSVVNKEKSIALKTMEDGQVLLYSSSVNSSIPKIPYPWLVFNDKVKVNSVFLRDSAGVSDSVLLLFGGSISSGGLDGHLKMLEGYLEFFMKPDLAETYLSLKRELEELIHKKLLNPKLDLQSHVELLSAVRLLISEDQCEGRFVFGRKASLPSTKASKERQSGGGGDNYKNELQTVLARAGHEIPTYKTRQLKKNQFRSTVIFNGLDFVGQPCSNKKLAEKEAAGVALQWLKGETHSPSQDIGNVSLILKPSKNKSTKASTRGAKWS 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 118875 130312 + Bma026996.1 Bma08g00006 86833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00006 1206 CDD SF2_C_RHA 565 716 - -
Bma08g00006 1206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 485 IPR014001 -
Bma08g00006 1206 SMART ha2_5 770 861 IPR007502 GO:0004386
Bma08g00006 1206 SUPERFAMILY dsRNA-binding domain-like 1105 1180 - -
Bma08g00006 1206 SMART DRBM_3 1108 1171 IPR014720 -
Bma08g00006 1206 Pfam Double-stranded RNA binding motif 1108 1170 IPR014720 -
Bma08g00006 1206 SMART helicmild6 602 708 IPR001650 -
Bma08g00006 1206 Pfam Helicase conserved C-terminal domain 575 707 IPR001650 -
Bma08g00006 1206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 748 IPR001650 -
Bma08g00006 1206 PANTHER ATP-DEPENDENT RNA HELICASE 106 1112 - -
Bma08g00006 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 884 IPR027417 -
Bma08g00006 1206 Pfam Helicase associated domain (HA2) 771 844 IPR007502 GO:0004386
Bma08g00006 1206 Pfam DEAD/DEAH box helicase 319 469 IPR011545 GO:0003676|GO:0005524
Bma08g00006 1206 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 927 1009 IPR011709 -
Bma08g00006 1206 Gene3D - 750 855 - -
Bma08g00006 1206 Gene3D - 569 726 IPR027417 -
Bma08g00006 1206 Gene3D - 1088 1175 - -
Bma08g00006 1206 SMART ultradead3 306 494 IPR014001 -
Bma08g00006 1206 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 106 1112 - -
Bma08g00006 1206 Gene3D - 257 486 IPR027417 -
Bma08g00006 1206 CDD DEXHc_RHA-like 324 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00006 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 1780.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00006 Bma-Chr8:118875 Bma08g00900 Bma-Chr8:47886530 0 dispersed
Bma01g00450 Bma-Chr1:3732579 Bma08g00006 Bma-Chr8:118875 0 transposed
Bma10g00131 Bma-Chr10:1178753 Bma08g00006 Bma-Chr8:118875 0 transposed
Bma12g00025 Bma-Chr12:772098 Bma08g00006 Bma-Chr8:118875 1.38E-176 transposed
Bma12g00412 Bma-Chr12:9284049 Bma08g00006 Bma-Chr8:118875 1.26E-34 transposed
Bma08g00006 Bma-Chr8:118875 Bma08g00045 Bma-Chr8:646624 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00006 Bma_Chr08 FPKM 1.177763 0.826399 0.819682 0.71852 1.195957 0.563368 0.93872 0.0 0.0 0.0