Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00007 ATGTCTTCCATTCCCAGCGACGACGAAGACGAGAACTTATCAGGCGAAGAAGCCGAAGGCGGTTTTGATGAGGACATTGAAGCTCTAAGGAGAGCATGCTTGCTCACCGGGGCGGATCCTGATGATTGTAGTTATCAGTCTTTGTCTGTCGGCGTCGGGAACGCTTGCTCCGGCGGACTTGTTCCTGTTTGTGAAAGTGACGGCGATGATGATCTCGAACTTGTGCGTAGCATTCGGGACCGGTTCTCGATGTCTAACGAGGAGTATCAACATCTGTCTGTGAAACCTATAAATACTATTCCTCCCGTGACGTCCGACGACGAGGAGGACGATTTTGAAACGCTCCGGGCCATTCAGCGACGCTTTGCGGCCTATGATAAAGGTGCATTCACTACTGATATAGAGGTTCCCTTGAAGAATCCTGACCAGGTTCAACATCAAGTCTCTGAAACTCATTTGAAGAAGGAATGTTACAATAAATTATCTAGCATCTCCGGGATAGAGTGCCCAAACTCAGAAGAACTTTGTAATACTGCCCATAACCCAAGTAATGTGGATCAGAATTCTTCCTCCGCAATATGGAAACTACCTAATGCTTACCAATCATTGACATCACCACTGCAAGGTTCTGGGTTACCAAAGTCTGCACTAGCATTTATTGATGCCATTAAAAAAAATAGATCTTGTCAGAAGCTCCTTCGAAGTAAGTTGATTCACATTGAGGCAAAACTTGAGGAGAACAAAGGGTTGAAAGACCGGTTCAAAATCTTGAAAGACTTTCAGGTTTCATGTAAAAGAAGAATAGGGCGTGCATTGTCCCAGAAGAAGGATCCACGTGTTCAGCTAATATCCGTGGAGAAACTGTGCACTTCAAAGGATTTGTCGAAGGTTAAGGACAAAAAGGTATCTGCCATGCTTTATGGTCCGGTGGAGAATTCTCATGTCGCAAAGTATAAAATGGCTTTAACCATGTTTCCACTTTCACTTGAACGGAAAAAATGGTCAAAAGCTGAAAAAGAAAATCTTGGGAAGGGAATAAAACAACAATTTCAAGAAATGGCGCTTCAAATTTCAGTGGCTCAATTCAGTGGTACTGTGGAATCGTCTGGAGATTCAAATGATATTGATAATATTCTTGAGTCAATTAAAGATTTTGATTTCACTCCTGAAAAGATTAGGGAGTTTCTGCCAAAGGTCGATTGGGAAAGATTGGCTTCCATGTACGTTGGGGGTCGGTCTGGTGCAGAATGTCAAACAAGGTGGTTGAATTATGAAGATCCATTGATCAATCATAACCCATGGACGGCAATAGAGGATAAGAATCTCTTGTTCATCATCCAAGAAAAAGGGATAAATAACTGGTTTGATATAGCAGTGTCACTGGGGACTAATAGGACTCCTTGTCAGTGCCTATCACGCTATCAGAGGAGTTTAAATGCTTCGATACTCAAAAGAGAGTGGACCAAGGAGGATGATGATAAACTTCGTTCTGCTGTAGAAACAATTGGCGTGGGAGATTGGCAAGCTGTAGCTTCTGCCTTAGAAGGACGGGCAGGTACCCAATGCTCAAATAGATGGAAAAAATCACTTGATCCTGCAAGAACTAGAAGAGGGTCATTCACACCTGTTGAAGACAAACGCCTGAAGATTGCAGTAATGCTTTTTGGGCCAAAAAATTGGAATAAGAAAGCTCAATTCTTGCCAGGTCGAAACCAAGTTCAATGTAGAGAAAGATGGTACAATTGTTTAGATCCTTCTCTAAAAAGAGGCAACTGGACTGACGAAGAGGATCAGATGCTTTCAACAGCGATTAGAGAACACGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAATGAGTGTCGGAGGAGGTGGACCAAATTATTTCCAAATGAAGTTCCATTGCTTCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGTAACTTTGTTGATCGAGAGTCTGAAAGATCTACCCTTCTCCTTATTGACTTTCAACCAACACCCATTACAAATCCAATCATTGCACCAGAGAATGACAATCCTTCTCAGAAAAGGAAGAGAAAGCTGAGCCAAAAGCCCAAAAAAGTCAAATCAAAGAAAGCCAAGACACAAACTGATGAAGTTATGGACCCGGTGGATATTTCAACTCTCATTTCTGCCTTGCCAAAGAAAATTAGGACCAAGAGAACCGGGAGAAAAACAATGAGGACGTCAGACAAGGTTGACGTTTCAAAGAATGGTAGCCAATCAGTTGAGAACAACGAGAATCACATGTTGCAGCCAGATATCAAGGAATCGGAGTTAACTTCGAGCACTTCTGTTAAATCTGCTGATTATAATGCAACAGTCAACAATAAGAAAAGGGATCTTAATGAACTTTGTAGGGGCAATGACTGCCTCTCTGAACTGATGGAAGACCAGAATTTCATGGATTCTTCAGCAACGTCATCATTGTCAGACAGGATACACAACAACGAATTTCTCGATGACAGTTTGTTCTATTTGGAACAATTAACAATACCGAATGGGGATGATAATTCAGGAACCAACCCCTCTGTCTGA 2583 42.32 MSSIPSDDEDENLSGEEAEGGFDEDIEALRRACLLTGADPDDCSYQSLSVGVGNACSGGLVPVCESDGDDDLELVRSIRDRFSMSNEEYQHLSVKPINTIPPVTSDDEEDDFETLRAIQRRFAAYDKGAFTTDIEVPLKNPDQVQHQVSETHLKKECYNKLSSISGIECPNSEELCNTAHNPSNVDQNSSSAIWKLPNAYQSLTSPLQGSGLPKSALAFIDAIKKNRSCQKLLRSKLIHIEAKLEENKGLKDRFKILKDFQVSCKRRIGRALSQKKDPRVQLISVEKLCTSKDLSKVKDKKVSAMLYGPVENSHVAKYKMALTMFPLSLERKKWSKAEKENLGKGIKQQFQEMALQISVAQFSGTVESSGDSNDIDNILESIKDFDFTPEKIREFLPKVDWERLASMYVGGRSGAECQTRWLNYEDPLINHNPWTAIEDKNLLFIIQEKGINNWFDIAVSLGTNRTPCQCLSRYQRSLNASILKREWTKEDDDKLRSAVETIGVGDWQAVASALEGRAGTQCSNRWKKSLDPARTRRGSFTPVEDKRLKIAVMLFGPKNWNKKAQFLPGRNQVQCRERWYNCLDPSLKRGNWTDEEDQMLSTAIREHGYSWAKVATCVPSRTDNECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLLIDFQPTPITNPIIAPENDNPSQKRKRKLSQKPKKVKSKKAKTQTDEVMDPVDISTLISALPKKIRTKRTGRKTMRTSDKVDVSKNGSQSVENNENHMLQPDIKESELTSSTSVKSADYNATVNNKKRDLNELCRGNDCLSELMEDQNFMDSSATSSLSDRIHNNEFLDDSLFYLEQLTIPNGDDNSGTNPSV 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 171955 182743 - Bma026998.2 Bma08g00007 86834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00007 860 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 772 - -
Bma08g00007 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 583 IPR017930 -
Bma08g00007 860 Pfam Myb-like DNA-binding domain 487 548 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 677 713 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 748 762 - -
Bma08g00007 860 CDD SANT 539 581 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 426 478 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 479 534 IPR017930 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 584 634 IPR001005 -
Bma08g00007 860 CDD SANT 387 424 IPR001005 -
Bma08g00007 860 Gene3D - 330 427 - -
Bma08g00007 860 Gene3D - 535 587 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 733 762 - -
Bma08g00007 860 Gene3D - 588 637 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 9 23 - -
Bma08g00007 860 CDD SANT 433 478 IPR001005 -
Bma08g00007 860 Gene3D - 429 479 - -
Bma08g00007 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 584 638 IPR017930 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 326 425 IPR001005 -
Bma08g00007 860 Gene3D - 483 533 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 1 24 - -
Bma08g00007 860 Pfam Myb-like DNA-binding domain 432 476 IPR001005 -
Bma08g00007 860 Pfam Myb-like DNA-binding domain 589 633 IPR001005 -
Bma08g00007 860 CDD SANT 486 530 IPR001005 -
Bma08g00007 860 SUPERFAMILY Homeodomain-like 534 630 IPR009057 -
Bma08g00007 860 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Bma08g00007 860 CDD SANT 591 634 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 532 583 IPR001005 -
Bma08g00007 860 SUPERFAMILY Homeodomain-like 463 532 IPR009057 -
Bma08g00007 860 SMART sant 536 585 IPR001005 -
Bma08g00007 860 SMART sant 588 636 IPR001005 -
Bma08g00007 860 SMART sant 330 427 IPR001005 -
Bma08g00007 860 SMART sant 483 532 IPR001005 -
Bma08g00007 860 SMART sant 430 480 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00007 K09422 MYBP; transcription factor MYB, plant - qsu:112030773 824.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00058 Bma08g00007 CCT
Bma03g00908 Bma08g00007 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00007 Bma-Chr8:171955 Bma04g01394 Bma-Chr4:48427482 1.29E-12 dispersed
Bma13g00366 Bma-Chr13:6726982 Bma08g00007 Bma-Chr8:171955 2.20E-07 transposed
Bma13g00410 Bma-Chr13:7535108 Bma08g00007 Bma-Chr8:171955 2.51E-07 transposed
Bma08g00007 Bma-Chr8:171955 Bma08g00048 Bma-Chr8:674169 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00410 . 1 625 MYB-Related Transcription Factor Family AT1G09770 81.4 3.6e-280 961.1
Bma13g00366 . 1 226 MYB-Related Transcription Factor Family AT1G09770 93.4 9.9e-113 404.8
Bma08g00007 BCT,CCT 206 682 MYB-Related Transcription Factor Family AT3G18100 55.5 6.3e-150 528.1
Bma08g00007 BCT,CCT 206 682 MYB-Related Transcription Factor Family AT3G18100 55.5 6.3e-150 528.1
Bma13g00410 . 1 625 MYB-Related Transcription Factor Family AT1G09770 81.4 3.6e-280 961.1
Bma13g00366 . 1 226 MYB-Related Transcription Factor Family AT1G09770 93.4 9.9e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57693 PF13921 Myb_DNA-bind_6 1.20E-11 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00007 Bma_Chr08 FPKM 13.511353 14.920774 12.027794 12.592208 10.747267 12.191724 10.562513 14.077873 12.459541 12.722363