Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00007 | ATGTCTTCCATTCCCAGCGACGACGAAGACGAGAACTTATCAGGCGAAGAAGCCGAAGGCGGTTTTGATGAGGACATTGAAGCTCTAAGGAGAGCATGCTTGCTCACCGGGGCGGATCCTGATGATTGTAGTTATCAGTCTTTGTCTGTCGGCGTCGGGAACGCTTGCTCCGGCGGACTTGTTCCTGTTTGTGAAAGTGACGGCGATGATGATCTCGAACTTGTGCGTAGCATTCGGGACCGGTTCTCGATGTCTAACGAGGAGTATCAACATCTGTCTGTGAAACCTATAAATACTATTCCTCCCGTGACGTCCGACGACGAGGAGGACGATTTTGAAACGCTCCGGGCCATTCAGCGACGCTTTGCGGCCTATGATAAAGGTGCATTCACTACTGATATAGAGGTTCCCTTGAAGAATCCTGACCAGGTTCAACATCAAGTCTCTGAAACTCATTTGAAGAAGGAATGTTACAATAAATTATCTAGCATCTCCGGGATAGAGTGCCCAAACTCAGAAGAACTTTGTAATACTGCCCATAACCCAAGTAATGTGGATCAGAATTCTTCCTCCGCAATATGGAAACTACCTAATGCTTACCAATCATTGACATCACCACTGCAAGGTTCTGGGTTACCAAAGTCTGCACTAGCATTTATTGATGCCATTAAAAAAAATAGATCTTGTCAGAAGCTCCTTCGAAGTAAGTTGATTCACATTGAGGCAAAACTTGAGGAGAACAAAGGGTTGAAAGACCGGTTCAAAATCTTGAAAGACTTTCAGGTTTCATGTAAAAGAAGAATAGGGCGTGCATTGTCCCAGAAGAAGGATCCACGTGTTCAGCTAATATCCGTGGAGAAACTGTGCACTTCAAAGGATTTGTCGAAGGTTAAGGACAAAAAGGTATCTGCCATGCTTTATGGTCCGGTGGAGAATTCTCATGTCGCAAAGTATAAAATGGCTTTAACCATGTTTCCACTTTCACTTGAACGGAAAAAATGGTCAAAAGCTGAAAAAGAAAATCTTGGGAAGGGAATAAAACAACAATTTCAAGAAATGGCGCTTCAAATTTCAGTGGCTCAATTCAGTGGTACTGTGGAATCGTCTGGAGATTCAAATGATATTGATAATATTCTTGAGTCAATTAAAGATTTTGATTTCACTCCTGAAAAGATTAGGGAGTTTCTGCCAAAGGTCGATTGGGAAAGATTGGCTTCCATGTACGTTGGGGGTCGGTCTGGTGCAGAATGTCAAACAAGGTGGTTGAATTATGAAGATCCATTGATCAATCATAACCCATGGACGGCAATAGAGGATAAGAATCTCTTGTTCATCATCCAAGAAAAAGGGATAAATAACTGGTTTGATATAGCAGTGTCACTGGGGACTAATAGGACTCCTTGTCAGTGCCTATCACGCTATCAGAGGAGTTTAAATGCTTCGATACTCAAAAGAGAGTGGACCAAGGAGGATGATGATAAACTTCGTTCTGCTGTAGAAACAATTGGCGTGGGAGATTGGCAAGCTGTAGCTTCTGCCTTAGAAGGACGGGCAGGTACCCAATGCTCAAATAGATGGAAAAAATCACTTGATCCTGCAAGAACTAGAAGAGGGTCATTCACACCTGTTGAAGACAAACGCCTGAAGATTGCAGTAATGCTTTTTGGGCCAAAAAATTGGAATAAGAAAGCTCAATTCTTGCCAGGTCGAAACCAAGTTCAATGTAGAGAAAGATGGTACAATTGTTTAGATCCTTCTCTAAAAAGAGGCAACTGGACTGACGAAGAGGATCAGATGCTTTCAACAGCGATTAGAGAACACGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAATGAGTGTCGGAGGAGGTGGACCAAATTATTTCCAAATGAAGTTCCATTGCTTCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGTAACTTTGTTGATCGAGAGTCTGAAAGATCTACCCTTCTCCTTATTGACTTTCAACCAACACCCATTACAAATCCAATCATTGCACCAGAGAATGACAATCCTTCTCAGAAAAGGAAGAGAAAGCTGAGCCAAAAGCCCAAAAAAGTCAAATCAAAGAAAGCCAAGACACAAACTGATGAAGTTATGGACCCGGTGGATATTTCAACTCTCATTTCTGCCTTGCCAAAGAAAATTAGGACCAAGAGAACCGGGAGAAAAACAATGAGGACGTCAGACAAGGTTGACGTTTCAAAGAATGGTAGCCAATCAGTTGAGAACAACGAGAATCACATGTTGCAGCCAGATATCAAGGAATCGGAGTTAACTTCGAGCACTTCTGTTAAATCTGCTGATTATAATGCAACAGTCAACAATAAGAAAAGGGATCTTAATGAACTTTGTAGGGGCAATGACTGCCTCTCTGAACTGATGGAAGACCAGAATTTCATGGATTCTTCAGCAACGTCATCATTGTCAGACAGGATACACAACAACGAATTTCTCGATGACAGTTTGTTCTATTTGGAACAATTAACAATACCGAATGGGGATGATAATTCAGGAACCAACCCCTCTGTCTGA | 2583 | 42.32 | MSSIPSDDEDENLSGEEAEGGFDEDIEALRRACLLTGADPDDCSYQSLSVGVGNACSGGLVPVCESDGDDDLELVRSIRDRFSMSNEEYQHLSVKPINTIPPVTSDDEEDDFETLRAIQRRFAAYDKGAFTTDIEVPLKNPDQVQHQVSETHLKKECYNKLSSISGIECPNSEELCNTAHNPSNVDQNSSSAIWKLPNAYQSLTSPLQGSGLPKSALAFIDAIKKNRSCQKLLRSKLIHIEAKLEENKGLKDRFKILKDFQVSCKRRIGRALSQKKDPRVQLISVEKLCTSKDLSKVKDKKVSAMLYGPVENSHVAKYKMALTMFPLSLERKKWSKAEKENLGKGIKQQFQEMALQISVAQFSGTVESSGDSNDIDNILESIKDFDFTPEKIREFLPKVDWERLASMYVGGRSGAECQTRWLNYEDPLINHNPWTAIEDKNLLFIIQEKGINNWFDIAVSLGTNRTPCQCLSRYQRSLNASILKREWTKEDDDKLRSAVETIGVGDWQAVASALEGRAGTQCSNRWKKSLDPARTRRGSFTPVEDKRLKIAVMLFGPKNWNKKAQFLPGRNQVQCRERWYNCLDPSLKRGNWTDEEDQMLSTAIREHGYSWAKVATCVPSRTDNECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLLIDFQPTPITNPIIAPENDNPSQKRKRKLSQKPKKVKSKKAKTQTDEVMDPVDISTLISALPKKIRTKRTGRKTMRTSDKVDVSKNGSQSVENNENHMLQPDIKESELTSSTSVKSADYNATVNNKKRDLNELCRGNDCLSELMEDQNFMDSSATSSLSDRIHNNEFLDDSLFYLEQLTIPNGDDNSGTNPSV | 860 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 171955 | 182743 | - | Bma026998.2 | Bma08g00007 | 86834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00007 | 860 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 18 | 772 | - | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 536 | 583 | IPR017930 | - | |
Bma08g00007 | 860 | Pfam | Myb-like DNA-binding domain | 487 | 548 | - | - | |
Bma08g00007 | 860 | MobiDBLite | consensus disorder prediction | 677 | 713 | - | - | |
Bma08g00007 | 860 | MobiDBLite | consensus disorder prediction | 748 | 762 | - | - | |
Bma08g00007 | 860 | CDD | SANT | 539 | 581 | IPR001005 | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-like domain profile. | 426 | 478 | IPR001005 | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 479 | 534 | IPR017930 | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-like domain profile. | 479 | 530 | IPR001005 | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-like domain profile. | 584 | 634 | IPR001005 | - | |
Bma08g00007 | 860 | CDD | SANT | 387 | 424 | IPR001005 | - | |
Bma08g00007 | 860 | Gene3D | - | 330 | 427 | - | - | |
Bma08g00007 | 860 | Gene3D | - | 535 | 587 | - | - | |
Bma08g00007 | 860 | MobiDBLite | consensus disorder prediction | 733 | 762 | - | - | |
Bma08g00007 | 860 | Gene3D | - | 588 | 637 | - | - | |
Bma08g00007 | 860 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Bma08g00007 | 860 | CDD | SANT | 433 | 478 | IPR001005 | - | |
Bma08g00007 | 860 | Gene3D | - | 429 | 479 | - | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 584 | 638 | IPR017930 | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-like domain profile. | 326 | 425 | IPR001005 | - | |
Bma08g00007 | 860 | Gene3D | - | 483 | 533 | - | - | |
Bma08g00007 | 860 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Bma08g00007 | 860 | Pfam | Myb-like DNA-binding domain | 432 | 476 | IPR001005 | - | |
Bma08g00007 | 860 | Pfam | Myb-like DNA-binding domain | 589 | 633 | IPR001005 | - | |
Bma08g00007 | 860 | CDD | SANT | 486 | 530 | IPR001005 | - | |
Bma08g00007 | 860 | SUPERFAMILY | Homeodomain-like | 534 | 630 | IPR009057 | - | |
Bma08g00007 | 860 | SUPERFAMILY | Homeodomain-like | 407 | 474 | IPR009057 | - | |
Bma08g00007 | 860 | CDD | SANT | 591 | 634 | IPR001005 | - | |
Bma08g00007 | 860 | ProSiteProfiles | Myb-like domain profile. | 532 | 583 | IPR001005 | - | |
Bma08g00007 | 860 | SUPERFAMILY | Homeodomain-like | 463 | 532 | IPR009057 | - | |
Bma08g00007 | 860 | SMART | sant | 536 | 585 | IPR001005 | - | |
Bma08g00007 | 860 | SMART | sant | 588 | 636 | IPR001005 | - | |
Bma08g00007 | 860 | SMART | sant | 330 | 427 | IPR001005 | - | |
Bma08g00007 | 860 | SMART | sant | 483 | 532 | IPR001005 | - | |
Bma08g00007 | 860 | SMART | sant | 430 | 480 | IPR001005 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma06g00058 | Bma08g00007 | CCT | |
Bma03g00908 | Bma08g00007 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00007 | Bma-Chr8:171955 | Bma04g01394 | Bma-Chr4:48427482 | 1.29E-12 | dispersed | |
Bma13g00366 | Bma-Chr13:6726982 | Bma08g00007 | Bma-Chr8:171955 | 2.20E-07 | transposed | |
Bma13g00410 | Bma-Chr13:7535108 | Bma08g00007 | Bma-Chr8:171955 | 2.51E-07 | transposed | |
Bma08g00007 | Bma-Chr8:171955 | Bma08g00048 | Bma-Chr8:674169 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57693 | PF13921 | Myb_DNA-bind_6 | 1.20E-11 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00007 | K09422 | - | qsu:112030773 | 824.313 |