Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00007 ATGTCTTCCATTCCCAGCGACGACGAAGACGAGAACTTATCAGGCGAAGAAGCCGAAGGCGGTTTTGATGAGGACATTGAAGCTCTAAGGAGAGCATGCTTGCTCACCGGGGCGGATCCTGATGATTGTAGTTATCAGTCTTTGTCTGTCGGCGTCGGGAACGCTTGCTCCGGCGGACTTGTTCCTGTTTGTGAAAGTGACGGCGATGATGATCTCGAACTTGTGCGTAGCATTCGGGACCGGTTCTCGATGTCTAACGAGGAGTATCAACATCTGTCTGTGAAACCTATAAATACTATTCCTCCCGTGACGTCCGACGACGAGGAGGACGATTTTGAAACGCTCCGGGCCATTCAGCGACGCTTTGCGGCCTATGATAAAGGTGCATTCACTACTGATATAGAGGTTCCCTTGAAGAATCCTGACCAGGTTCAACATCAAGTCTCTGAAACTCATTTGAAGAAGGAATGTTACAATAAATTATCTAGCATCTCCGGGATAGAGTGCCCAAACTCAGAAGAACTTTGTAATACTGCCCATAACCCAAGTAATGTGGATCAGAATTCTTCCTCCGCAATATGGAAACTACCTAATGCTTACCAATCATTGACATCACCACTGCAAGGTTCTGGGTTACCAAAGTCTGCACTAGCATTTATTGATGCCATTAAAAAAAATAGATCTTGTCAGAAGCTCCTTCGAAGTAAGTTGATTCACATTGAGGCAAAACTTGAGGAGAACAAAGGGTTGAAAGACCGGTTCAAAATCTTGAAAGACTTTCAGGTTTCATGTAAAAGAAGAATAGGGCGTGCATTGTCCCAGAAGAAGGATCCACGTGTTCAGCTAATATCCGTGGAGAAACTGTGCACTTCAAAGGATTTGTCGAAGGTTAAGGACAAAAAGGTATCTGCCATGCTTTATGGTCCGGTGGAGAATTCTCATGTCGCAAAGTATAAAATGGCTTTAACCATGTTTCCACTTTCACTTGAACGGAAAAAATGGTCAAAAGCTGAAAAAGAAAATCTTGGGAAGGGAATAAAACAACAATTTCAAGAAATGGCGCTTCAAATTTCAGTGGCTCAATTCAGTGGTACTGTGGAATCGTCTGGAGATTCAAATGATATTGATAATATTCTTGAGTCAATTAAAGATTTTGATTTCACTCCTGAAAAGATTAGGGAGTTTCTGCCAAAGGTCGATTGGGAAAGATTGGCTTCCATGTACGTTGGGGGTCGGTCTGGTGCAGAATGTCAAACAAGGTGGTTGAATTATGAAGATCCATTGATCAATCATAACCCATGGACGGCAATAGAGGATAAGAATCTCTTGTTCATCATCCAAGAAAAAGGGATAAATAACTGGTTTGATATAGCAGTGTCACTGGGGACTAATAGGACTCCTTGTCAGTGCCTATCACGCTATCAGAGGAGTTTAAATGCTTCGATACTCAAAAGAGAGTGGACCAAGGAGGATGATGATAAACTTCGTTCTGCTGTAGAAACAATTGGCGTGGGAGATTGGCAAGCTGTAGCTTCTGCCTTAGAAGGACGGGCAGGTACCCAATGCTCAAATAGATGGAAAAAATCACTTGATCCTGCAAGAACTAGAAGAGGGTCATTCACACCTGTTGAAGACAAACGCCTGAAGATTGCAGTAATGCTTTTTGGGCCAAAAAATTGGAATAAGAAAGCTCAATTCTTGCCAGGTCGAAACCAAGTTCAATGTAGAGAAAGATGGTACAATTGTTTAGATCCTTCTCTAAAAAGAGGCAACTGGACTGACGAAGAGGATCAGATGCTTTCAACAGCGATTAGAGAACACGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAATGAGTGTCGGAGGAGGTGGACCAAATTATTTCCAAATGAAGTTCCATTGCTTCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGTAACTTTGTTGATCGAGAGTCTGAAAGATCTACCCTTCTCCTTATTGACTTTCAACCAACACCCATTACAAATCCAATCATTGCACCAGAGAATGACAATCCTTCTCAGAAAAGGAAGAGAAAGCTGAGCCAAAAGCCCAAAAAAGTCAAATCAAAGAAAGCCAAGACACAAACTGATGAAGTTATGGACCCGGTGGATATTTCAACTCTCATTTCTGCCTTGCCAAAGAAAATTAGGACCAAGAGAACCGGGAGAAAAACAATGAGGACGTCAGACAAGGTTGACGTTTCAAAGAATGGTAGCCAATCAGTTGAGAACAACGAGAATCACATGTTGCAGCCAGATATCAAGGAATCGGAGTTAACTTCGAGCACTTCTGTTAAATCTGCTGATTATAATGCAACAGTCAACAATAAGAAAAGGGATCTTAATGAACTTTGTAGGGGCAATGACTGCCTCTCTGAACTGATGGAAGACCAGAATTTCATGGATTCTTCAGCAACGTCATCATTGTCAGACAGGATACACAACAACGAATTTCTCGATGACAGTTTGTTCTATTTGGAACAATTAACAATACCGAATGGGGATGATAATTCAGGAACCAACCCCTCTGTCTGA 2583 42.32 MSSIPSDDEDENLSGEEAEGGFDEDIEALRRACLLTGADPDDCSYQSLSVGVGNACSGGLVPVCESDGDDDLELVRSIRDRFSMSNEEYQHLSVKPINTIPPVTSDDEEDDFETLRAIQRRFAAYDKGAFTTDIEVPLKNPDQVQHQVSETHLKKECYNKLSSISGIECPNSEELCNTAHNPSNVDQNSSSAIWKLPNAYQSLTSPLQGSGLPKSALAFIDAIKKNRSCQKLLRSKLIHIEAKLEENKGLKDRFKILKDFQVSCKRRIGRALSQKKDPRVQLISVEKLCTSKDLSKVKDKKVSAMLYGPVENSHVAKYKMALTMFPLSLERKKWSKAEKENLGKGIKQQFQEMALQISVAQFSGTVESSGDSNDIDNILESIKDFDFTPEKIREFLPKVDWERLASMYVGGRSGAECQTRWLNYEDPLINHNPWTAIEDKNLLFIIQEKGINNWFDIAVSLGTNRTPCQCLSRYQRSLNASILKREWTKEDDDKLRSAVETIGVGDWQAVASALEGRAGTQCSNRWKKSLDPARTRRGSFTPVEDKRLKIAVMLFGPKNWNKKAQFLPGRNQVQCRERWYNCLDPSLKRGNWTDEEDQMLSTAIREHGYSWAKVATCVPSRTDNECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLLIDFQPTPITNPIIAPENDNPSQKRKRKLSQKPKKVKSKKAKTQTDEVMDPVDISTLISALPKKIRTKRTGRKTMRTSDKVDVSKNGSQSVENNENHMLQPDIKESELTSSTSVKSADYNATVNNKKRDLNELCRGNDCLSELMEDQNFMDSSATSSLSDRIHNNEFLDDSLFYLEQLTIPNGDDNSGTNPSV 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 171955 182743 - Bma026998.2 Bma08g00007 86834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00007 860 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 772 - -
Bma08g00007 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 583 IPR017930 -
Bma08g00007 860 Pfam Myb-like DNA-binding domain 487 548 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 677 713 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 748 762 - -
Bma08g00007 860 CDD SANT 539 581 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 426 478 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 479 534 IPR017930 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 584 634 IPR001005 -
Bma08g00007 860 CDD SANT 387 424 IPR001005 -
Bma08g00007 860 Gene3D - 330 427 - -
Bma08g00007 860 Gene3D - 535 587 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 733 762 - -
Bma08g00007 860 Gene3D - 588 637 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 9 23 - -
Bma08g00007 860 CDD SANT 433 478 IPR001005 -
Bma08g00007 860 Gene3D - 429 479 - -
Bma08g00007 860 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 584 638 IPR017930 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 326 425 IPR001005 -
Bma08g00007 860 Gene3D - 483 533 - -
Bma08g00007 860 MobiDBLite consensus disorder prediction 1 24 - -
Bma08g00007 860 Pfam Myb-like DNA-binding domain 432 476 IPR001005 -
Bma08g00007 860 Pfam Myb-like DNA-binding domain 589 633 IPR001005 -
Bma08g00007 860 CDD SANT 486 530 IPR001005 -
Bma08g00007 860 SUPERFAMILY Homeodomain-like 534 630 IPR009057 -
Bma08g00007 860 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Bma08g00007 860 CDD SANT 591 634 IPR001005 -
Bma08g00007 860 ProSiteProfiles Myb-like domain profile. 532 583 IPR001005 -
Bma08g00007 860 SUPERFAMILY Homeodomain-like 463 532 IPR009057 -
Bma08g00007 860 SMART sant 536 585 IPR001005 -
Bma08g00007 860 SMART sant 588 636 IPR001005 -
Bma08g00007 860 SMART sant 330 427 IPR001005 -
Bma08g00007 860 SMART sant 483 532 IPR001005 -
Bma08g00007 860 SMART sant 430 480 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00058 Bma08g00007 CCT
Bma03g00908 Bma08g00007 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00007 Bma-Chr8:171955 Bma04g01394 Bma-Chr4:48427482 1.29E-12 dispersed
Bma13g00366 Bma-Chr13:6726982 Bma08g00007 Bma-Chr8:171955 2.20E-07 transposed
Bma13g00410 Bma-Chr13:7535108 Bma08g00007 Bma-Chr8:171955 2.51E-07 transposed
Bma08g00007 Bma-Chr8:171955 Bma08g00048 Bma-Chr8:674169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57693 PF13921 Myb_DNA-bind_6 1.20E-11 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00007 K09422 - qsu:112030773 824.313