Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00020 ATGGCGAGGAAGAGCAAGGGGAGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGCAATCTTCAAGTGACATTCTCAAAGCGACGGCTGGGGCTTTTCAAGAAAGCGAGCGAGCTTTGTACGTTGTGTGGCGTGGAGATCGCAATCATCGTGTTTTCGCCTGGAAAGAAGGTTTTCTCATTCGGCCACCCGAGCGTCGAGACGCTCATCGACCGGTTCCCAATGAAAAACCCTTCGCCAAACTCAGTGGCACTAAAGCTCATCGAAGCGCATCGAAACGTCACTGCACAGGACTTAAATGCTCAACTGACGCAAATAACTAATCAGCTGGAGGACGAGAAGAAGCGGGGGGAGGGTCTGGATAAAATGCGTCGAGATGGACAGATGGGGGAGTGCTGGTGGGAGTGTCCACTCGAGGAGCTCGAGCAGCCACACCTAGAGCAACTCAAGGTTTCGCTAGAAGAGCTCAAGAACAAGGTGGCTAAACAGACCGAAAGAATCCTCGTCCAAAGCTCAAACCCTAATCCTCCTCCTCCTCCTCCTCGCTACTTCCATGGAAACTCAAGCTTCCAATCAGGAGTTATTCCCTACGATTCAAAGGCTAATGTTGGGTATCACTCGAATCCCAACACCCTACTTCCCCATCAACACAATCTCGGATATGGACGAGGTTTCTTCTGA 684 51.02 MARKSKGRQKVEMVKMQNESNLQVTFSKRRLGLFKKASELCTLCGVEIAIIVFSPGKKVFSFGHPSVETLIDRFPMKNPSPNSVALKLIEAHRNVTAQDLNAQLTQITNQLEDEKKRGEGLDKMRRDGQMGECWWECPLEELEQPHLEQLKVSLEELKNKVAKQTERILVQSSNPNPPPPPPRYFHGNSSFQSGVIPYDSKANVGYHSNPNTLLPHQHNLGYGRGFF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 390608 391291 - Bma027012.1 Bma08g00020 86847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00020 227 MobiDBLite consensus disorder prediction 168 189 - -
Bma08g00020 227 CDD MADS_MEF2_like 7 74 IPR033896 GO:0000977|GO:0045944
Bma08g00020 227 SUPERFAMILY SRF-like 7 78 IPR036879 GO:0003677|GO:0046983
Bma08g00020 227 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 PANTHER MADS BOX PROTEIN 5 187 - -
Bma08g00020 227 Coils Coil 147 174 - -
Bma08g00020 227 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 Gene3D - 18 84 IPR036879 GO:0003677|GO:0046983
Bma08g00020 227 Coils Coil 97 117 - -
Bma08g00020 227 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 187 - -
Bma08g00020 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 Gene3D - 85 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00020 - - - qsu:112040131 251.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00644 Bma-Chr5:37854568 Bma08g00020 Bma-Chr8:390608 1.66E-55 dispersed
Bma06g00322 Bma-Chr6:6053330 Bma08g00020 Bma-Chr8:390608 3.29E-10 dispersed
Bma08g00020 Bma-Chr8:390608 Bma12g00399 Bma-Chr12:8459578 3.82E-40 dispersed
Bma08g00020 Bma-Chr8:390608 Bma03g01180 Bma-Chr3:17252449 2.55E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda15g00471 . . . . Bma08g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g02216
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57696 PF00319 SRF-TF 3.70E-24 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00020 Bma_Chr08 FPKM 11.16119 12.210972 5.718553 5.913352 17.752182 15.482594 15.783952 6.856928 7.610466 6.92858