Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00020 ATGGCGAGGAAGAGCAAGGGGAGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGCAATCTTCAAGTGACATTCTCAAAGCGACGGCTGGGGCTTTTCAAGAAAGCGAGCGAGCTTTGTACGTTGTGTGGCGTGGAGATCGCAATCATCGTGTTTTCGCCTGGAAAGAAGGTTTTCTCATTCGGCCACCCGAGCGTCGAGACGCTCATCGACCGGTTCCCAATGAAAAACCCTTCGCCAAACTCAGTGGCACTAAAGCTCATCGAAGCGCATCGAAACGTCACTGCACAGGACTTAAATGCTCAACTGACGCAAATAACTAATCAGCTGGAGGACGAGAAGAAGCGGGGGGAGGGTCTGGATAAAATGCGTCGAGATGGACAGATGGGGGAGTGCTGGTGGGAGTGTCCACTCGAGGAGCTCGAGCAGCCACACCTAGAGCAACTCAAGGTTTCGCTAGAAGAGCTCAAGAACAAGGTGGCTAAACAGACCGAAAGAATCCTCGTCCAAAGCTCAAACCCTAATCCTCCTCCTCCTCCTCCTCGCTACTTCCATGGAAACTCAAGCTTCCAATCAGGAGTTATTCCCTACGATTCAAAGGCTAATGTTGGGTATCACTCGAATCCCAACACCCTACTTCCCCATCAACACAATCTCGGATATGGACGAGGTTTCTTCTGA 684 51.02 MARKSKGRQKVEMVKMQNESNLQVTFSKRRLGLFKKASELCTLCGVEIAIIVFSPGKKVFSFGHPSVETLIDRFPMKNPSPNSVALKLIEAHRNVTAQDLNAQLTQITNQLEDEKKRGEGLDKMRRDGQMGECWWECPLEELEQPHLEQLKVSLEELKNKVAKQTERILVQSSNPNPPPPPPRYFHGNSSFQSGVIPYDSKANVGYHSNPNTLLPHQHNLGYGRGFF 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 390608 391291 - Bma027012.1 Bma08g00020 86847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00020 227 MobiDBLite consensus disorder prediction 168 189 - -
Bma08g00020 227 CDD MADS_MEF2_like 7 74 IPR033896 GO:0000977|GO:0045944
Bma08g00020 227 SUPERFAMILY SRF-like 7 78 IPR036879 GO:0003677|GO:0046983
Bma08g00020 227 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 PANTHER MADS BOX PROTEIN 5 187 - -
Bma08g00020 227 Coils Coil 147 174 - -
Bma08g00020 227 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 Gene3D - 18 84 IPR036879 GO:0003677|GO:0046983
Bma08g00020 227 Coils Coil 97 117 - -
Bma08g00020 227 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 187 - -
Bma08g00020 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bma08g00020 227 Gene3D - 85 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00644 Bma-Chr5:37854568 Bma08g00020 Bma-Chr8:390608 1.66E-55 dispersed
Bma06g00322 Bma-Chr6:6053330 Bma08g00020 Bma-Chr8:390608 3.29E-10 dispersed
Bma08g00020 Bma-Chr8:390608 Bma12g00399 Bma-Chr12:8459578 3.82E-40 dispersed
Bma08g00020 Bma-Chr8:390608 Bma03g01180 Bma-Chr3:17252449 2.55E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57696 PF00319 SRF-TF 3.70E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00020 - - qsu:112040131 251.136