Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00024 GTTGAGGGAACGTCTGGTCTGGAACCAGTGAATTGCCGGGCGAAGGGTGGTGCCCCGGGTTTCAAAGTGGCTATTCTAGGAGCTGCCGGTGGGATTGGACAGCCTCTTGCTATGCTGATGAAGATGAATCCTCTCGTCTCAGTTCTTCATCTTTACGATGTTGTTAATGCTCCTGGTGTCACTGCTGATGTTAGTCATATGGATACTGGTGCTGTGGTGCGTGGTTTTTTAGGCCAACCACAGCTTGAGAGTGCACTAACGGGGATGGACCTTGTAGTCATACCTGCTGGTGTACCAAGGAAACCTGGAATGACAAGAGATGATCTTTTCAACATCAATGCTGGAATTGTCAGGACTCTCTGCGAAGGAATAGCAAAATGCTGTCCTAATGCAATTGTCAACTTAATCAGTAATCCCGCTGAAGTCCTGGGTCTTGATCCTCGAGAAGTTGATGTTCCAGTCGTTGGGGGTCATGCTGGAGTTACAATATTGCCTCTTTTGTCACAGGTTAAACCCCCCTGCACATTTACACCAGAAGAAACTGAATACCTCACCAACCGCATCCAAAACGGCGGGACTGAAGTTGTTGAGGCAAAAGCTGGAGCTGGGTCTGCAACTCTGTCAATGGCATTTGCTGCAGCTAAGTTTGCAGATGCATGCCTTCGCGGATTAAGAGGCGATGCTGGTGTTATAGAATGCTCCTTTGTAGCATCTCAGCAGGTGACGGAGCTTCCTTTCTTCGCAACAAAAGTACGAATCGGCCGAACCGGAGTGGAAGAAATCTATCAACTCGGTCCTTTGAATGAGTATGAAAGGCAAGATACAATATAA 831 47.77 VEGTSGLEPVNCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVVIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCTFTPEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAFAAAKFADACLRGLRGDAGVIECSFVASQQVTELPFFATKVRIGRTGVEEIYQLGPLNEYERQDTI 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 418817 421663 + Bma027016.1 Bma08g00024 86851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00024 276 Gene3D - 13 140 - -
Bma08g00024 276 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 4 139 - -
Bma08g00024 276 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 143 IPR036291 -
Bma08g00024 276 SUPERFAMILY LDH C-terminal domain-like 140 273 IPR015955 GO:0003824|GO:0016616
Bma08g00024 276 Pfam lactate/malate dehydrogenase, NAD binding domain 22 143 IPR001236 GO:0016491
Bma08g00024 276 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 140 273 IPR022383 GO:0016616
Bma08g00024 276 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 140 272 - -
Bma08g00024 276 Gene3D - 141 275 IPR015955 GO:0003824|GO:0016616
Bma08g00024 276 PANTHER MALATE AND LACTATE DEHYDROGENASE 4 139 - -
Bma08g00024 276 PANTHER MALATE AND LACTATE DEHYDROGENASE 140 272 - -
Bma08g00024 276 CDD MDH_glyoxysomal_mitochondrial 21 273 IPR010097 GO:0006099|GO:0030060
Bma08g00024 276 PIRSF Lac_mal_DH 140 275 IPR001557 GO:0016616|GO:0019752
Bma08g00024 276 PIRSF Lac_mal_DH 20 143 IPR001557 GO:0016616|GO:0019752
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00024 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - vvi:100232924 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00024 Bma-Chr8:418817 Bma15g01095 Bma-Chr15:43529949 1.81E-167 dispersed
Bma08g00024 Bma-Chr8:418817 Bma13g00935 Bma-Chr13:39833899 9.89E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g823 . . . . . Bpe12g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1061 Cone10ag1076 . . . . . . Bda15g00476 . . . . Bma08g00024 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005288 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00024 Bma_Chr08 FPKM 12.671362 13.947269 14.275452 15.510918 7.102691 6.991799 5.897894 17.169582 18.683622 18.327728