Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00029 ATGTTGCAGTTTTCGTTTCAGCGAGTGAGGAAGTTGACAGTGTTGAGGAATCAGCGCTTCGCTTTTGGGAAATTTCATTTCTCTACCGCCGCGGAGCCATCATCCAGCCCCGGTAATCCTCCGAGGGTTCCAAATCTTATTGGTGGGAGATTTGTTGATTCTGAATCATCAGCATTCATCGATGTTGTAAACCCAGCAACGCAAGAAATTGTATCTCAAGTTCCATTGACTACAACTGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGAAAGCTTTTCCATCATGGCGTAATACCCCAGTTACAACCCGTCAGCGAATAATGCTCAAATTCCAAGAGCTTATTCGAAAAAACATGGATAAGCTTGCCCAGAATATTACGACTGAACAAGGAAAAACATTGAAGGATGCACATGGGGATGTGTTTCGTGGGCTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACCCTACAAATGGGGGAGTATGTCTCCAACGTGTCTCATGGAATTGACACCTACAGCATTCGAGAGCCTCTAGGCGTGTGTGCCGGGATTTGTCCATTCAACTTTCCGGCAATGATTCCCCTATGGATGTTTCCAGTCGCAGTAACATGTGGGAATACCTTTGTTTTAAAGCCATCTGAAAAGGATCCAGGGGCGTCTATAATTCTGGCCGAGTTGGCAAAAGAGGCTGGGTTACCTGATGGTGTCTTAAACATTGTGCACGGCACCAATGAGATTGTTAACGCCATTTGTGATGATGACAACATAAGAGCTGTTTCATTTGTGGGCTCTAATACTGCGGGAATGCACATTTATTCAAGAGCATCAGCTAAAGGAAAACGAGTTCAGTCTAATATGGGGGCCAAGAATCATGCTATTGTAATGCCTGACGCAAGTGTAGACGCTACTCTGAATTCTTTAGTCGCTGCTGGTTTTGGTGCTGCAGGACAAAGATGCATGGCACTTAGCACGGCTTTATTTGTTGGTGGCTCAGAGGCATGGGAGAAAAAACTTGTGGAACGAGCCAATGCTTTGAAGGTAAACTCTGGAATGGAATCTGATGCCGATCTTGGTCCAGTAATTAGCAAACAGGCAAAAGAAAGAATCTGCAGATTAATTGAATCTGGTGTCCAAAGTGGAGCAAGGATGCTGCTTGACGGGAGAAGTATTGTGGTTCCTGGATATGAACATGGCAATTTCATAGGCCCTACTATCTTATCAGAGGTTGCAGAAAACATGGAGTGCTACAAAGAGGAGATTTTTGGCCCAGTTCTTCTTTGCATGCAGGCAGAAAGCCTAGACGAAGCCATAAGCATCGTCAACAGAAACAAATATGGAAACGGAGCTGCAATATTCACTACATCTGGTGTAGCTGCAAGGAAGTTCCAGACTGAGATTGAGGCTGGACAGGTCGGGATCAACGTTCCGATTCCAGTGCCATTGCCGTTTTTCTCGTTCACTGGCTCCAAATCATCTTTTGCTGGGGACCTCAACTTCTATGGCAAAGCTGGTGTTAATTTTTACACACAGATCAAAACAGTGACCCAACAATGGAAAGACCTGCCCGATGGAAGTGGAGTCAACCTTGCAATGCCAACTTCTAGTTCTCAAAAATAG 1620 44.94 MLQFSFQRVRKLTVLRNQRFAFGKFHFSTAAEPSSSPGNPPRVPNLIGGRFVDSESSAFIDVVNPATQEIVSQVPLTTTEEFKAAVSAAKKAFPSWRNTPVTTRQRIMLKFQELIRKNMDKLAQNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASIILAELAKEAGLPDGVLNIVHGTNEIVNAICDDDNIRAVSFVGSNTAGMHIYSRASAKGKRVQSNMGAKNHAIVMPDASVDATLNSLVAAGFGAAGQRCMALSTALFVGGSEAWEKKLVERANALKVNSGMESDADLGPVISKQAKERICRLIESGVQSGARMLLDGRSIVVPGYEHGNFIGPTILSEVAENMECYKEEIFGPVLLCMQAESLDEAISIVNRNKYGNGAAIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKSSFAGDLNFYGKAGVNFYTQIKTVTQQWKDLPDGSGVNLAMPTSSSQK 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 465816 479294 - Bma027022.1 Bma08g00029 86856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00029 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Bma08g00029 539 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Bma08g00029 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Bma08g00029 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Bma08g00029 539 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 33 537 - -
Bma08g00029 539 SUPERFAMILY ALDH-like 41 521 IPR016161 GO:0016491
Bma08g00029 539 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Bma08g00029 539 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Bma08g00029 539 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 33 537 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00029 Bma-Chr8:465816 Bma09g00142 Bma-Chr9:4826596 0 dispersed
Bma08g00029 Bma-Chr8:465816 Bma07g00481 Bma-Chr7:5816668 1.66E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00029 K00140 - egr:104419873 915.22