Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00029 | ATGTTGCAGTTTTCGTTTCAGCGAGTGAGGAAGTTGACAGTGTTGAGGAATCAGCGCTTCGCTTTTGGGAAATTTCATTTCTCTACCGCCGCGGAGCCATCATCCAGCCCCGGTAATCCTCCGAGGGTTCCAAATCTTATTGGTGGGAGATTTGTTGATTCTGAATCATCAGCATTCATCGATGTTGTAAACCCAGCAACGCAAGAAATTGTATCTCAAGTTCCATTGACTACAACTGAAGAATTTAAAGCTGCAGTATCTGCAGCAAAGAAAGCTTTTCCATCATGGCGTAATACCCCAGTTACAACCCGTCAGCGAATAATGCTCAAATTCCAAGAGCTTATTCGAAAAAACATGGATAAGCTTGCCCAGAATATTACGACTGAACAAGGAAAAACATTGAAGGATGCACATGGGGATGTGTTTCGTGGGCTAGAGGTGGTTGAACATGCTTGTGGGATGGCAACCCTACAAATGGGGGAGTATGTCTCCAACGTGTCTCATGGAATTGACACCTACAGCATTCGAGAGCCTCTAGGCGTGTGTGCCGGGATTTGTCCATTCAACTTTCCGGCAATGATTCCCCTATGGATGTTTCCAGTCGCAGTAACATGTGGGAATACCTTTGTTTTAAAGCCATCTGAAAAGGATCCAGGGGCGTCTATAATTCTGGCCGAGTTGGCAAAAGAGGCTGGGTTACCTGATGGTGTCTTAAACATTGTGCACGGCACCAATGAGATTGTTAACGCCATTTGTGATGATGACAACATAAGAGCTGTTTCATTTGTGGGCTCTAATACTGCGGGAATGCACATTTATTCAAGAGCATCAGCTAAAGGAAAACGAGTTCAGTCTAATATGGGGGCCAAGAATCATGCTATTGTAATGCCTGACGCAAGTGTAGACGCTACTCTGAATTCTTTAGTCGCTGCTGGTTTTGGTGCTGCAGGACAAAGATGCATGGCACTTAGCACGGCTTTATTTGTTGGTGGCTCAGAGGCATGGGAGAAAAAACTTGTGGAACGAGCCAATGCTTTGAAGGTAAACTCTGGAATGGAATCTGATGCCGATCTTGGTCCAGTAATTAGCAAACAGGCAAAAGAAAGAATCTGCAGATTAATTGAATCTGGTGTCCAAAGTGGAGCAAGGATGCTGCTTGACGGGAGAAGTATTGTGGTTCCTGGATATGAACATGGCAATTTCATAGGCCCTACTATCTTATCAGAGGTTGCAGAAAACATGGAGTGCTACAAAGAGGAGATTTTTGGCCCAGTTCTTCTTTGCATGCAGGCAGAAAGCCTAGACGAAGCCATAAGCATCGTCAACAGAAACAAATATGGAAACGGAGCTGCAATATTCACTACATCTGGTGTAGCTGCAAGGAAGTTCCAGACTGAGATTGAGGCTGGACAGGTCGGGATCAACGTTCCGATTCCAGTGCCATTGCCGTTTTTCTCGTTCACTGGCTCCAAATCATCTTTTGCTGGGGACCTCAACTTCTATGGCAAAGCTGGTGTTAATTTTTACACACAGATCAAAACAGTGACCCAACAATGGAAAGACCTGCCCGATGGAAGTGGAGTCAACCTTGCAATGCCAACTTCTAGTTCTCAAAAATAG | 1620 | 44.94 | MLQFSFQRVRKLTVLRNQRFAFGKFHFSTAAEPSSSPGNPPRVPNLIGGRFVDSESSAFIDVVNPATQEIVSQVPLTTTEEFKAAVSAAKKAFPSWRNTPVTTRQRIMLKFQELIRKNMDKLAQNITTEQGKTLKDAHGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASIILAELAKEAGLPDGVLNIVHGTNEIVNAICDDDNIRAVSFVGSNTAGMHIYSRASAKGKRVQSNMGAKNHAIVMPDASVDATLNSLVAAGFGAAGQRCMALSTALFVGGSEAWEKKLVERANALKVNSGMESDADLGPVISKQAKERICRLIESGVQSGARMLLDGRSIVVPGYEHGNFIGPTILSEVAENMECYKEEIFGPVLLCMQAESLDEAISIVNRNKYGNGAAIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGSKSSFAGDLNFYGKAGVNFYTQIKTVTQQWKDLPDGSGVNLAMPTSSSQK | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 465816 | 479294 | - | Bma027022.1 | Bma08g00029 | 86856 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00029 | 539 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 313 | 324 | IPR016160 | GO:0016491 | |
Bma08g00029 | 539 | Pfam | Aldehyde dehydrogenase family | 51 | 515 | IPR015590 | GO:0016491 | |
Bma08g00029 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 62 | 496 | IPR016162 | GO:0016491 | |
Bma08g00029 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 288 | 488 | IPR016163 | GO:0016620 | |
Bma08g00029 | 539 | PANTHER | METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE | 33 | 537 | - | - | |
Bma08g00029 | 539 | SUPERFAMILY | ALDH-like | 41 | 521 | IPR016161 | GO:0016491 | |
Bma08g00029 | 539 | CDD | ALDH_F6_MMSDH | 43 | 519 | IPR010061 | GO:0004491 | |
Bma08g00029 | 539 | TIGRFAM | MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) | 45 | 519 | IPR010061 | GO:0004491 | |
Bma08g00029 | 539 | PANTHER | MALONATE-SEMIALDEHYDE DEHYDROGENASE | 33 | 537 | IPR010061 | GO:0004491 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00029 | Bma-Chr8:465816 | Bma09g00142 | Bma-Chr9:4826596 | 0 | dispersed | |
Bma08g00029 | Bma-Chr8:465816 | Bma07g00481 | Bma-Chr7:5816668 | 1.66E-64 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00029 | K00140 | - | egr:104419873 | 915.22 |