Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00031 ATGAGTAGTAAAAAGAGGAGCTCCAACTCTGTGCAAGACGTTGAGAGTCAACTGGATATACCCACTGCAGAAGACGTAGAGCAGAAGTCTTCAAAGAAGAAAATGAAAGGCGAAAAGGGGAAGAAAGTTGAAGTTGATGTGAATGCTAGTTCAATAAAACCTATGGAGAGAACAAAGAAAAGGAAAGCATTAGATAAAGAGCGACGGCTTGCTACTGTGGAGAATCAAAGTGCACAAAAAAAATCTGACGAGACTAAGCCATTGATGGTGTCTCTGTCAAGTAGTGGTGTCCCTGAGTTCCATATCAGTGTCTTCAAAGACTTGGCAGCAGCTGATGTTTCTGTGAGAGAAGCTGCAGTAGAAACCTTGGTGATGGAGTTACAGGAAGTTCAAAAAGCCTATGATAAGTTAGAGAATAAGGAGGTGGAGGAAGGTGGTTTGAAATTGGAAGCTGAAAAGGATGATGGGTTGGACAATTGTGCACCTTCTGTTAAATATGCTGTCCGTAGACTGGTTCGAGGTGTTTCTTCTTCTAGAGAGTGTGCAAGGCAGGGTTTTGCTCTAGGTTTAACTGTTTTGGTGGGTACAATCCCCAACATCAATGTAGGCTCACTGATGAAACTCATTGCTGATTTGTTGGATGTTTCTTCATCAATGAAAGGCCAGGAAGTAAAGGACTGTCTCTTAGGTCGCTTGTTTGCATATGGTGCCCTTAGCCGCTCAGGAAGACTTACGCAGGAGTGTTACTCTAATAAAAACACTTCTTACATTAAGGAGTTCACCACTATTCTCATATCCCTTGCAAGCAAAAAAAGATACTTACAAGAGCCAGCTGTCGCAATTATTCTAGATCTAATAGAAAAGTTGCCGATAGAAGCATTGCTGAATGATGTCCTTGAAGCTCCAGGAATTCAAGAATGGTTTGATGGGGCTATTGAAGTTGGCAATCCTGATGCCTTGCTTCTGGCTTTGAAATTGAGAGAGAGAATTTCTTTAGACAATGCTTCATTCGCCAAGCTTTTGCCAAATCCTTATAGCACTGAAAAACTTTTTGCTGCTGACTGTCTTTCCTCTCTCTCCAATTGCTTCAAGGAGTCTACATTTTGTCAGCCTCGAATTCACAGTTTATGGTCAGTTCTTCTTAATATACTTTTACCTGACATGGTTTTACAATCTGAAGAATCATTGTCAGTTTCTTCTTTAAAGAAGCACAAAAAAAATCGCAAAAGTGGCTCTTCTGAAGAAGAAATTTCTCAGAATTTTCAGAATTTTTTGGAAGTTGTGATCGAAGGTTCTCTTCTCTCATCATCTCATGATCGTAAACATCTGGCCTTTGATGTTCTACTGACTCTCTTACCGAGACTTCCTGCATCTTTTATATCAATCATGCTCTCATATAAAGTTGTTCAGTGCATAATGGATATACTTTCTACAAAGGATTCTTGGCTGCATAAAGCTGTGCAATTTTTTATTAAAGAGTTATCAAATTGGGTAATGCACGATGAGATGAGAAGAATTGCTGTCATTGTGGCTTTACAAAAGCACAGCTATGGAAAGTTTGATTGCATTACTAGGACAAAAACAGTTAAAATTTTGACGTCAGAATTCAAATCAGAATCTGGCTGTTTGCTTTTTATTCAGAACTTGGCAAACTTGTTTGTGGATGAAAGCCATACTTCTGAAGAGCCCTCTGACCAGAGTCAAACAACAGATGACAACTCTGAGGTTGGTTCAGTGGAGGAAAAGGATTTAGTTGGAACATTGGGTAGCTCTGACTTTTTGAGAACATGGGTCGTAGAATCCCTCCCAAGCGTTTTGAAAAATTCTAGTTTGGAGGCTGATGCAAAGTTTCGGGTGCAAAAAGAAATTTTGAAATTTTTAGCGGTTCAGGGTCTCTTCACTGCTTCACTTGGCTCAGAAGTGACATCGTTTGAATTGCAGGAGAAATTTAGATGGCCAAAAGCAGCCACATCAAGTTCCCTTTCCATTATGTGCATTGAACAACTGCAGTTATTGCTGGCTAATGCTCAAAAGGCTGAAGGGTCTCGTGATTTGGCTAAGAGCTCTGAAACAAATGATCTCGGGGCTTATTGCATGAGGTTTCTTAGTACCATGCGCAACATTCCATCAGTTTCTCTCTTTAGACGTTTGAATGATGAAGATGAAAATTCTTTAAAAAAACTACAAGAGATGGAAACTGAACTTTGGAGGGAGGAAAAGAACTGTGGACTAAGTGCTGAGGCAGATAAATTGCATGCCCTGCGGTGCTTGCTTATTCAACTGTTTTTGCAAATACTCCTTCGGCCTGATGATTTTTCTGAAGCTGCATCTGAACTAATTATGTGTTGTAAGAAAGCATTCAGAGCCTCTGATCTTCTAGGCTCCACTGGGGAAGATGAACAGGAAGATGATGAAACACCTGAGTTAATGGATGTTCTTGTGGATACATTGCTTTCATTGCTACCACAGTCTTCAGCTCCCATGAGAACAGCAATTGAGCAGGTTTTTAAGTACTTCTGTGAACAAATCATGGATGATGGTTTACTAAGAATGTTAAGAGTCATCAAGAAAAATTTGAAACCAGCTAGACATCAGAATGCAGAAAGTTCTGACAACGATGAGGAAGACGATGAGGATTTTCTGGATGTCGAAGAAGACGAAGAAATGGATGAAGCTGAGATTGGTGTAACAGGAGAGAGTGATGAGCAGACAGACGAATCGGAAGCTGTAGTTAGAGTTGATGAAGTAGACAAAGAACATTCTGACAATTCTGATGATTCTGATGGAGGGATGGATGATGATGCAATGTTTCGAATGGATACTTATCTTGCCCAAATTTTCAAAGAGCGAAAAAATCAGACTGGGAGTGAAAGTGCTCAATCTCAGCTCATGTTATTTAAGCTTCGTGTCCTCTCGCTGCTGGAAATTTACTTGCATAAAAATCCGGGTAACCCGCAGGTGCTATTGGTCTATTCAAACTTGGTTCGGGCATTTATAAGCTCACATTCTGCTGAAGGGAGTGAGCAGCTTGGACAACGACTATGGGGAATTCTGCAAAAGAAAGTCCTCAAAGCTAAAGATTATCCTCAGGGTGAAGCTGTTCAATTAGCTACACTTGAATCTTTACTGGTAAAGAGTCTCAAGCTAGCCTCAAAACCGTTCAGAAGAAAGAAATCTATTACAAACCCGTCCAAAAAACAGCAGTCGGCCTCCTGGAATCGACACAAGATGGTCATCTCTCTTGGTCAAAATTCAACATTTTGGATTCTGAAGATCGTTGATGCCAAAAACTTGTCCGAAACAGAGTTGCAGAGAGTATTTGACATCTTTGAAGGTGTATTTGTGGACTATTTCAACAGTAAAAAGTCTCAGATAAAATTTGAATTTCTGAAAGAAATCGTCAAACGAAGGCCATGGATTGGGCATCATCTGTTGGGGTTCCTTCTCGACAAATGTGGAATTGCAAACTCCGAATTCAGAAGGGTCGAGGCATTAGATTTGGTCATTGAGATATTGACATCTCTCATTTCCTCCGATATCAGCTCAGACGATTCACAGAAGTCAGCAAAAGCCCATTTTCGGAGACTCAGGAAGTTGAAATCAGTGACAACAATGTCCTCCGAGATCATCAACTCAGACAGTTCACAGAACTTGGTGAAAATGCACCTCAGCAAAATATGTGAGTTGATAAAGGAGTCACTGACAAACATGCCGGAAAAGCAGTCAAGACGGGCTGGAGTGAGAAAGTTTTGCGTGTGGGCATTCAACATCGTGGCTTCTCTCAACTTAACCAAGCTATTTCTGGAGAGTCTGCCGGCGGAGGGCCATGCCGCTTGTGAAACCCAACTTGGGGAGCAGTTCAATAGTTTAAAGAAGCAGGCAGAGTAG 3888 40.92 MSSKKRSSNSVQDVESQLDIPTAEDVEQKSSKKKMKGEKGKKVEVDVNASSIKPMERTKKRKALDKERRLATVENQSAQKKSDETKPLMVSLSSSGVPEFHISVFKDLAAADVSVREAAVETLVMELQEVQKAYDKLENKEVEEGGLKLEAEKDDGLDNCAPSVKYAVRRLVRGVSSSRECARQGFALGLTVLVGTIPNINVGSLMKLIADLLDVSSSMKGQEVKDCLLGRLFAYGALSRSGRLTQECYSNKNTSYIKEFTTILISLASKKRYLQEPAVAIILDLIEKLPIEALLNDVLEAPGIQEWFDGAIEVGNPDALLLALKLRERISLDNASFAKLLPNPYSTEKLFAADCLSSLSNCFKESTFCQPRIHSLWSVLLNILLPDMVLQSEESLSVSSLKKHKKNRKSGSSEEEISQNFQNFLEVVIEGSLLSSSHDRKHLAFDVLLTLLPRLPASFISIMLSYKVVQCIMDILSTKDSWLHKAVQFFIKELSNWVMHDEMRRIAVIVALQKHSYGKFDCITRTKTVKILTSEFKSESGCLLFIQNLANLFVDESHTSEEPSDQSQTTDDNSEVGSVEEKDLVGTLGSSDFLRTWVVESLPSVLKNSSLEADAKFRVQKEILKFLAVQGLFTASLGSEVTSFELQEKFRWPKAATSSSLSIMCIEQLQLLLANAQKAEGSRDLAKSSETNDLGAYCMRFLSTMRNIPSVSLFRRLNDEDENSLKKLQEMETELWREEKNCGLSAEADKLHALRCLLIQLFLQILLRPDDFSEAASELIMCCKKAFRASDLLGSTGEDEQEDDETPELMDVLVDTLLSLLPQSSAPMRTAIEQVFKYFCEQIMDDGLLRMLRVIKKNLKPARHQNAESSDNDEEDDEDFLDVEEDEEMDEAEIGVTGESDEQTDESEAVVRVDEVDKEHSDNSDDSDGGMDDDAMFRMDTYLAQIFKERKNQTGSESAQSQLMLFKLRVLSLLEIYLHKNPGNPQVLLVYSNLVRAFISSHSAEGSEQLGQRLWGILQKKVLKAKDYPQGEAVQLATLESLLVKSLKLASKPFRRKKSITNPSKKQQSASWNRHKMVISLGQNSTFWILKIVDAKNLSETELQRVFDIFEGVFVDYFNSKKSQIKFEFLKEIVKRRPWIGHHLLGFLLDKCGIANSEFRRVEALDLVIEILTSLISSDISSDDSQKSAKAHFRRLRKLKSVTTMSSEIINSDSSQNLVKMHLSKICELIKESLTNMPEKQSRRAGVRKFCVWAFNIVASLNLTKLFLESLPAEGHAACETQLGEQFNSLKKQAE 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 486581 492610 + Bma027024.1 Bma08g00031 86858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00031 1295 Coils Coil 61 81 - -
Bma08g00031 1295 Pfam DNA polymerase phi 166 978 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bma08g00031 1295 MobiDBLite consensus disorder prediction 861 880 - -
Bma08g00031 1295 MobiDBLite consensus disorder prediction 886 933 - -
Bma08g00031 1295 MobiDBLite consensus disorder prediction 1 87 - -
Bma08g00031 1295 MobiDBLite consensus disorder prediction 886 904 - -
Bma08g00031 1295 SUPERFAMILY ARM repeat 102 891 IPR016024 -
Bma08g00031 1295 Coils Coil 120 140 - -
Bma08g00031 1295 MobiDBLite consensus disorder prediction 905 933 - -
Bma08g00031 1295 MobiDBLite consensus disorder prediction 53 74 - -
Bma08g00031 1295 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 90 1292 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bma08g00031 1295 MobiDBLite consensus disorder prediction 1 17 - -
Bma08g00031 1295 MobiDBLite consensus disorder prediction 25 46 - -
Bma08g00031 1295 Coils Coil 714 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00031 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - csin:114310157 1647.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00031 Bma_Chr08 FPKM 27.034241 30.124308 27.084349 26.47995 39.217972 41.042393 46.929001 38.187988 40.555786 43.415054