Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00032 ATGACGTCCGCGGTGTTAGCCAGCCAGAACGATCATAATTGGTCGCAGTCAAGAGCCGTTGGTGGCGAAGGCGGAGGACGAGGAGCATTCATGGCCAAAGGCCCTTACTCAAACCCTAACCCTAACCCTAACCCTAACCCTAAGTCCAACAAGAGGCAATTTCATGGTGAAATTAACGGCTTCCAGATGGAGGATTTCCCTGCCGCCACGCAATCGGCATCTGATGATGCTTCTTCGATCAGTCATCATCGCAGATCGTCAAACGGCACCGAGTTCAGTAATTACGTCAACTTCAATGTCAGTTCCTACACCAGAGAGCAGCTGGTGGATCTCAAGATCCGACTTCAAGTTGAGCTTGAGCAGATTCGGAATTTGAAAAGTCGAATAGAGGCCAGCAAGCTACATCCCATTAACAATAACTTGAAGAAGTCATCCAAGATATCAGGACAGAAAAGACCAACACCGCCCAATTCCGGGAAAATTTTGAGTCGCTCGAATTCCGAAGCAGGGAGTCTGATGAAGGCGTGCTCCCAAATTTTGACGAAGGTGATGAAACATAAGCACAGCTGGATTTTTAACAAGCCGGTAGATGTGGTCGGTATGGGTCTCCACGATTATCTTGATATAATTAAGCATCCGATGGATCTAGGATCCGTCAAATCGAAATTAGGCAAAAATGTTTATACTTCACCTGCAGATTTTGCCGCCGATGTCCGGCTGACTTTCAAAAATGCCATGGCATATAATCCACGTGGTCACGATGTGCACGCCATGGCAGAGCAGTTGTTGATTATATTTGAAGAATTGTTTCAGCCTTTGAGGAAGATAGTGGAGGAAGAAAGGCAGGTGGATCCTGTTTACGACGAGGAGTTGCAAGCGAGTTCTTGGAATCACGTACAGTTGGAAAGAGTGACAAAGAAGGATAATCCCAAGCATATCTCTAAGAAATTGGACTCTTCTAGGGCCCCGGTGCAGGCACCTGCCAGTTCGTCACACCTTCCATTGGCGCAGTCGCCAGTTAAAACCCCTTCTCCGGTGCGGGCTCCACCGGTGAAGCATTTGAAGCAACCAAAGCCGAAGGCAAAGGATCCTAACAAGCGAGACATGACTTTGGAGGAGAAGCACCGGTTGGGACTTGGGTTGCAGAGTTTGCCCCAAGAGAAAATGGATCAGGTGGTGCAAATCATAAAGAAGAGAAATGGCCATCTGAAGCAGGATGGGGACGAGATCGAGCTGGACATTGAAGCTGTAGATACTGAGACCCTTTGGGAACTTGATCGGCTTGTTACGAATTGGAAGAAAATGGTGAGCAAGATTAAGCGTCAAGCACTCATGGGCAACATGAATACAACTTCAAATAAATCCAATGGGGATTTACCTCTGATGGAGAAACTAGAAGTTGGGACAGAGGCAAAAAAGCCGAGGAAAGGGGACGCTGGTGAGGAAGATGTGGACATTGGAGATGATGAGATGCCAATGACTGGTTTCCCTCCGGTAGAAATTGAGAAAGATGCGGCCGGAGGACATGCCAGTAGTAGTTCCAGTGGCTCTAGTGGCTCAAGTAGTGACGATTCTTCTTCATCAAGTGGTATATAA 1596 47.49 MTSAVLASQNDHNWSQSRAVGGEGGGRGAFMAKGPYSNPNPNPNPNPKSNKRQFHGEINGFQMEDFPAATQSASDDASSISHHRRSSNGTEFSNYVNFNVSSYTREQLVDLKIRLQVELEQIRNLKSRIEASKLHPINNNLKKSSKISGQKRPTPPNSGKILSRSNSEAGSLMKACSQILTKVMKHKHSWIFNKPVDVVGMGLHDYLDIIKHPMDLGSVKSKLGKNVYTSPADFAADVRLTFKNAMAYNPRGHDVHAMAEQLLIIFEELFQPLRKIVEEERQVDPVYDEELQASSWNHVQLERVTKKDNPKHISKKLDSSRAPVQAPASSSHLPLAQSPVKTPSPVRAPPVKHLKQPKPKAKDPNKRDMTLEEKHRLGLGLQSLPQEKMDQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMGNMNTTSNKSNGDLPLMEKLEVGTEAKKPRKGDAGEEDVDIGDDEMPMTGFPPVEIEKDAAGGHASSSSSGSSGSSSDDSSSSSGI 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 493690 496649 - Bma027025.1 Bma08g00032 86859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00032 531 MobiDBLite consensus disorder prediction 302 368 - -
Bma08g00032 531 Gene3D - 362 439 IPR038336 -
Bma08g00032 531 SMART bromo_6 165 275 IPR001487 GO:0005515
Bma08g00032 531 MobiDBLite consensus disorder prediction 323 338 - -
Bma08g00032 531 PRINTS Bromodomain signature 219 237 IPR001487 GO:0005515
Bma08g00032 531 PRINTS Bromodomain signature 203 219 IPR001487 GO:0005515
Bma08g00032 531 PRINTS Bromodomain signature 237 256 IPR001487 GO:0005515
Bma08g00032 531 PRINTS Bromodomain signature 187 200 IPR001487 GO:0005515
Bma08g00032 531 ProSiteProfiles Bromodomain profile. 184 256 IPR001487 GO:0005515
Bma08g00032 531 MobiDBLite consensus disorder prediction 467 482 - -
Bma08g00032 531 MobiDBLite consensus disorder prediction 302 318 - -
Bma08g00032 531 MobiDBLite consensus disorder prediction 508 531 - -
Bma08g00032 531 MobiDBLite consensus disorder prediction 69 91 - -
Bma08g00032 531 Pfam Bromodomain extra-terminal - transcription regulation 369 430 IPR027353 -
Bma08g00032 531 MobiDBLite consensus disorder prediction 467 531 - -
Bma08g00032 531 CDD Bromo_plant1 172 268 IPR037377 -
Bma08g00032 531 SUPERFAMILY Bromodomain 162 279 IPR036427 GO:0005515
Bma08g00032 531 ProSiteProfiles NET domain profile. 359 440 IPR027353 -
Bma08g00032 531 PANTHER TRANSCRIPTION FACTOR GTE2 36 529 - -
Bma08g00032 531 Coils Coil 105 128 - -
Bma08g00032 531 MobiDBLite consensus disorder prediction 1 54 - -
Bma08g00032 531 Gene3D - 154 288 IPR036427 GO:0005515
Bma08g00032 531 MobiDBLite consensus disorder prediction 1 17 - -
Bma08g00032 531 MobiDBLite consensus disorder prediction 136 166 - -
Bma08g00032 531 Pfam Bromodomain 176 260 IPR001487 GO:0005515
Bma08g00032 531 PANTHER OSJNBA0053K19.4 PROTEIN 36 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00032 - - - csv:101216341 673.315
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00620 Bma08g00032 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00620 Bma-Chr5:37067915 Bma08g00032 Bma-Chr8:493690 0 dispersed
Bma08g00032 Bma-Chr8:493690 Bma10g00481 Bma-Chr10:5678511 2.29E-76 dispersed
Bma08g00032 Bma-Chr8:493690 Bma02g01398 Bma-Chr2:56232808 1.89E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00032 Bma_Chr08 FPKM 3.476821 6.017038 4.85149 7.067359 8.624862 7.811265 7.243487 7.419798 3.745193 3.322313