Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00047 ATGATCAAAGCCATTGAAGAAAACCTTGAGATAGATGATGGTGATCTCAGTGCAACATTCAAAATTGCAGATTTAGGCTGTTCAGTCGGACCAAACACATTCATATCAATGAAAGACATGGTTGAAGCCATTGATAGAAAATTCCATCTCCAAAACCCAAGCTCTAAACTCATAGATTTCCAGGTCTTCTTCAACGATCACGTCTCCAATGACTTCAACACTCTCTTCTGCAATCTTCCCCCGGACAGAAATTACTTTGCAGCAGCTGTTGCCGGCTCCTTCCATGGCAGATTATTTCCCAAGGCTTCTTTAAACGTTGTTTATTCTTCCTTGTCTGTTCAATGGCTGTCCAAGGCTCCCAAGGAATTGGGGGACTTGGCTAGTCCTGCATGTAATAGGGGCAAAATATTTTACCATAATTCCCCAAACGAAGTTTGGCAGGCTTATTCAGCTCAGTTTGCAGTGGACATGGAGGGCTTTTTAGCTGCCCGAGCATATGAGCTCACTGCCGGAGGGCTGATGATGATGATATTTCCTGCACGGCCGGAGGGGAAGCTCCCCGGAGAGTGCTCTATGGGACCTGTGTTCCGGCCTTTGGAGGATTCTCTTATCGATTTGGTCAATGAGGGAAAAATAAGCAAAGACCAACTTGACTCATTCAATATGCCTCTGTACAGCCCATCAGAGGAGGAGCTTCGAACCCTAGTCAAGCAAAATGGCTTCTTTGAGGTTGTATCAGTTGAAATGACGAATCCAATGTCGTTTCCAGTGATCAGTGCGGAAATGAGCAGAGCTTCTTTTGAGAGTGTTCTCAGCAAACACTTCGGGGACGACATTATTGACCCTCTTTATGAGCGTTACTCTCAGAAGATCGATGGCCTTCCCCCTCTCACTTCCGGCGTCGACGTCGCTGTCGGATGTTTTGCGTTTATAAAGCGTAACCACCGGAAAATATAA 957 45.77 MIKAIEENLEIDDGDLSATFKIADLGCSVGPNTFISMKDMVEAIDRKFHLQNPSSKLIDFQVFFNDHVSNDFNTLFCNLPPDRNYFAAAVAGSFHGRLFPKASLNVVYSSLSVQWLSKAPKELGDLASPACNRGKIFYHNSPNEVWQAYSAQFAVDMEGFLAARAYELTAGGLMMMIFPARPEGKLPGECSMGPVFRPLEDSLIDLVNEGKISKDQLDSFNMPLYSPSEEELRTLVKQNGFFEVVSVEMTNPMSFPVISAEMSRASFESVLSKHFGDDIIDPLYERYSQKIDGLPPLTSGVDVAVGCFAFIKRNHRKI 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 668568 669602 - Bma027042.1 Bma08g00047 86874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00047 318 PANTHER - 2 301 - -
Bma08g00047 318 Pfam SAM dependent carboxyl methyltransferase 10 292 IPR005299 GO:0008168
Bma08g00047 318 Gene3D - 118 291 IPR042086 -
Bma08g00047 318 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 3 296 IPR029063 -
Bma08g00047 318 Gene3D Vaccinia Virus protein VP39 14 253 IPR029063 -
Bma08g00047 318 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 301 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00047 - - - pop:7490229 358.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00047 Bma-Chr8:668568 Bma14g01919 Bma-Chr14:40970258 5.42E-76 dispersed
Bma14g01918 Bma-Chr14:40943164 Bma08g00047 Bma-Chr8:668568 1.35E-09 dispersed
Bma08g00047 Bma-Chr8:668568 Bma04g00217 Bma-Chr4:1857829 1.88E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g247 . . . Bda15g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00999 . . . Bma08g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002487 1 2 0 2 1 2 1 2 2 2 2 2 1 2 2 1 2 0 1 2 2 1 2 2 2 2 2 2 3 11 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00047 Bma_Chr08 FPKM 3.078646 3.081283 0.429685 0.42721 0.331596 0.0 0.0 1.668098 1.777379 1.62