Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00059 ATGGCGGCACCTTTTACGGGATTGCAACACAGAGACGGAGGTGGAGTTGCGGTGCTGTCGAGTTCGGTGAATAAGGTGGATGCGTCTGCGTCTCCTTCGTCGTCGAATGTTTGTTTGAGGAGCTCCGAGCCTAAGTCTCCTATTCTGATTTTTTTGTTCTTCCACAAAGCGATTCGTTATGAGCTTGATGCGCTTCATAGGTTTGCTATGGCCCTTGCCACCGGCCAGCGAACCGATATTCAGCCTCTTGTCAAGCGATACCATTTTCTTAGATCAATTTATAAACATCACTCCAATGCTGAAGACGAGGTAATTTTTCCAGCACTTGACATTCGTGTGAAGAATGTAGCTCAAACATACTCTCTTGAGCACAAAGGAGAAAGCAATCTTTTTGATCATCTTTTTGAGCTACTCCATGCTAGCACACAAGATGCTGAATGCTTTCCAAGGGAGTTAGCATCTTGTACCGGAGCATTGAGGACATCAGTTAGCCAACATATGGCCAAGGAAGAAGAGCAGGTCTTTCCCTTGCTCATGGAGAAGTTCTCTCTTGATGAGCAAGCATCTCTGGTCTGGCAATTCTTGTGCAGTATTCCTGTGTATATGATGGCTGAATTTCTTCCTTGGCTATCATCATCTATTTCACCAGATGAATGCCAGGATCTACGGAAGTGTTTGAGCAAAATAGTTCCCAAGGAAAAGCTTCTTCAACAGGTCATATTTACATGGATGGAAGGGACAACTGGCGCAAGCATCGTTGAAAATTGTGTCGATGATTCTTTGGGTCAATGTTGTTCTGATGCTAGCATTTGCGAATCATCCCAGAAAAAAGAGATAGTTAAAAAAGCTTGTGACGTGATGAGTGCTGGAAAAAGGAAACATTTAGAGTTTAGTGCTGATATAACCAATGTCATGGAGGCACATCCAATTAATGACATATTACTTTGGCATAACGCTATTAAAAAGGAGTTAAATGAGATAGCTGAAGAGGCTAGAAACATACAACTGTCTGGAAACTTTGATAATCTTTCAGCCTTTAATGAGAGACTACATTTCATTGCTGAAGTTTGCATCTTTCATAGCATTGCTGAAGACAAGGTTATCTTTCCCGCAGTAGATGGAGAGTTATCCTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTTAACGAGTTCAGGTGCTTGATTGAAAGTATCCAAAGTGATGGAGAAATATCTAGTTCGTCAGCTGAATTTTATGCGAAGTTGTGCTCACATGCTGATCAAATTATGGATACAATTCAGAGACATTTTAATAATGAGGAACTTCAGGTTCTTCCACTTGCTCGAAAGCACTTTAGCCTCAAAAGACAGCGTGAAATCCTATATCATAGCTTGTGCATGATGCCCTTGAAGTTAATTGAGCGAGTCTTGCCATGGCTAGTGGGGTCGTCGTCTGAAGATGAAGCTGAAAATTTCCTGAAAAACATCCAATTGGCAGCTCCAACATCAGATACTGCTTTAGTGACACTCTTTTCTGGTTGGGCTTGCAAGGCTCGTAATCGAGGTTTATGCTTGTCTTCAAGAGTGACTGGCAGCTGTCCAGTAAAGAGGTTCTTTGAAATTGAAGAAACTTTTGTCCCATCATTCTGTTCTTGTGCCTCTGTGGTGTCTGCAAGAGAGACTGCATCATCAACTAACAGTGAAAGACCAGCAAAACGAAATGTCTCAGTTTCGTGCAAAAGTTGTGTTTCCTCTAGCTGCTCAGAGACGGCTAATTTGCAGCAGTCTTGCTGTAATGATGAGACTTGTTGTGTCCCGGGCTTAGGAGTCGATAGCAATAATCTGGGGTTGAGTTCTCTTTTTACAACAAAGTCTTTGTGTTCTTTATCTCCCATCTCTGGTGCCCCTTCTCTCAATTCGAGCCTTTTCTCATGGGAAACAGATATTAGCTTTTCTGATATCGGGCCTTCAGGACGACCTATTGATACTATTTTTAAGTTTCATAAAGCTATAAGAAAAGACTTGGAGTATTTAGATGTGGAATCTGGAAAGCTTAATCAATGTGATGAGACATCCCTAAGGCAATTTATTGGTAGATTTCGCCTGCTATGGGGATTGTATCGAGCTCATAGTAATGCTGAAGATGATATAGTGTTTCCTGCTCTAGAGTCTAAAGAGGCATTGCATAATGTCAGTCACTCTTACACGCTGGACCATAAACAGGAGGAAAGGTTATTTGAAGACATTTCAAGTGTTCTTTTGGACCTTTCTCATCTCCATGTAAACAGCCCGTTGGACGTTGATTCGCCCACAAATAGCTATAACTCTATGGGAAAAAAGTATGTTGAGCTAGCTACGAAGCTTCAAGGAATGTGCAAATCTATTAGAGTGACTTTAGATCAGCATATCTTCAGGGAAGAACTTGAACTATGGCCATTGTTCGGAAAACATTTCTCTGTGGAGGAGCAAGATAAAATAGTTGGACGCATCATTGGAACAACAGGTGCAGAAGTTCTCCAATCAATGTTGCCATGGGTAACTTCAGCATTGACGCAGGATGAACAGAATATAATGATGGATACATGGAAGCAAGCCACAAAGAACACAATGTTCAATGAGTGGCTCAATGAATGTTGGAAAGGATCTGAGGCATCGACCATACGTACGGGAACATTGGAATCTGATACTACTCAAAAAGGTGTTGAGATTCGAGAAGGCGTGAATCAGTGCGATCAGTTGTTTAAGCCTGGTTGGAAGGATATTTTCCGAATGAATCAAAATGAGATTGAATCAGAGATAAGAAAAGTCTACCAGGATTTGACTCTTGATCCAAGAAGAAAGGCATATCTGGTTCAGAATCTTATGACCAGTCGCTGGATTGCCGCCCAACAGAAATTACCAGAAGTCACAGCGGGAAGTTCTAATAGTGAAGATGTATTGGAACGTTCACCATCCTATAGTGACCCAGAAAAAAGTAAATTTGGGTGTGAACATTACAAAAGAAACTGCAAACTCCTTGCTGCTTGCTGTGGCAAGTTGTTTACTTGTCGGTTTTGCCACGATAATGTTAGCGACCATTCTATGGATAGGAAAGCAACCTCTGAGATGATGTGCATGCGCTGTATGACAATTCAGGCAGTTGCGCCTACATGTTCAACTCCTTCATGCAATGGATTCTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTTGACGATGAAAGAACTGTATATCATTGCCCATTTTGCAACTTGTGTCGTCTGGGGAAAGGTCTTGGACTTGACTTTTTTCACTGTATGACGTGCAATTGTTGTCTGGGGATAAAGGTAGTGAATCACAAGTGCCTTGAAAAAAGTTTGGAAACAAACTGTCCCATCTGCTGTGATTTCCTGTTCACATCCAGTGCAACAGTCAGAGCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATATACTTGTAGCCATTACACGTGTCCTATTTGCAGCAAATCATTAGGAGACATGGCGGTTTATTTTGGCATGCTTGACGCACTGTTGGCTGCTGAAGAGCTTCCAGACGAGTACAGGGGTCGTTGTCAGCAGGATATATTATGCAATGACTGTGATAGGAAGGGGACGTCAAGATTTCACTGGCTATATCACAAGTGTGGATCTTGTGGTTCATACAACACCCGAGTCATCAAGAGCGAGACTGCAAATGCAGATTGCTCGGAATCAAATCGATGA 3723 41.96 MAAPFTGLQHRDGGGVAVLSSSVNKVDASASPSSSNVCLRSSEPKSPILIFLFFHKAIRYELDALHRFAMALATGQRTDIQPLVKRYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLHASTQDAECFPRELASCTGALRTSVSQHMAKEEEQVFPLLMEKFSLDEQASLVWQFLCSIPVYMMAEFLPWLSSSISPDECQDLRKCLSKIVPKEKLLQQVIFTWMEGTTGASIVENCVDDSLGQCCSDASICESSQKKEIVKKACDVMSAGKRKHLEFSADITNVMEAHPINDILLWHNAIKKELNEIAEEARNIQLSGNFDNLSAFNERLHFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEESQFNEFRCLIESIQSDGEISSSSAEFYAKLCSHADQIMDTIQRHFNNEELQVLPLARKHFSLKRQREILYHSLCMMPLKLIERVLPWLVGSSSEDEAENFLKNIQLAAPTSDTALVTLFSGWACKARNRGLCLSSRVTGSCPVKRFFEIEETFVPSFCSCASVVSARETASSTNSERPAKRNVSVSCKSCVSSSCSETANLQQSCCNDETCCVPGLGVDSNNLGLSSLFTTKSLCSLSPISGAPSLNSSLFSWETDISFSDIGPSGRPIDTIFKFHKAIRKDLEYLDVESGKLNQCDETSLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEERLFEDISSVLLDLSHLHVNSPLDVDSPTNSYNSMGKKYVELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNIMMDTWKQATKNTMFNEWLNECWKGSEASTIRTGTLESDTTQKGVEIREGVNQCDQLFKPGWKDIFRMNQNEIESEIRKVYQDLTLDPRRKAYLVQNLMTSRWIAAQQKLPEVTAGSSNSEDVLERSPSYSDPEKSKFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCMTIQAVAPTCSTPSCNGFSMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGLDFFHCMTCNCCLGIKVVNHKCLEKSLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPDEYRGRCQQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRVIKSETANADCSESNR 1240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 750624 759133 + Bma027055.1 Bma08g00059 86886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00059 1240 Pfam Zinc-ribbon 1166 1224 IPR039512 -
Bma08g00059 1240 PANTHER CHY ZINC FINGER PROTEIN 28 1235 - -
Bma08g00059 1240 SUPERFAMILY Zinc hairpin stack 1056 1112 IPR037275 -
Bma08g00059 1240 Pfam Ring finger domain 1118 1160 IPR001841 -
Bma08g00059 1240 Gene3D nmb1532 protein domain like 46 196 - -
Bma08g00059 1240 Gene3D nmb1532 protein domain like 314 458 - -
Bma08g00059 1240 SMART ring_2 1119 1160 IPR001841 -
Bma08g00059 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1112 1163 IPR013083 -
Bma08g00059 1240 ProSiteProfiles Zinc finger CHY-type profile. 983 1052 IPR008913 GO:0008270
Bma08g00059 1240 SUPERFAMILY RING/U-box 1118 1164 - -
Bma08g00059 1240 Gene3D - 1191 1234 - -
Bma08g00059 1240 SUPERFAMILY CHY zinc finger-like 982 1046 IPR037274 GO:0008270
Bma08g00059 1240 MobiDBLite consensus disorder prediction 965 985 - -
Bma08g00059 1240 CDD Hr-like 50 176 - -
Bma08g00059 1240 CDD Hr-like 312 440 - -
Bma08g00059 1240 Pfam Hemerythrin HHE cation binding domain 654 807 IPR012312 -
Bma08g00059 1240 Pfam Hemerythrin HHE cation binding domain 308 442 IPR012312 -
Bma08g00059 1240 Pfam Hemerythrin HHE cation binding domain 52 178 IPR012312 -
Bma08g00059 1240 CDD RING-H2_Pirh2 1118 1161 - -
Bma08g00059 1240 Pfam CHY zinc finger 990 1065 IPR008913 GO:0008270
Bma08g00059 1240 Gene3D nmb1532 protein domain like 649 871 - -
Bma08g00059 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1055 1118 IPR017921 -
Bma08g00059 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 1235 - -
Bma08g00059 1240 CDD Hr-like 656 806 - -
Bma08g00059 1240 ProSiteProfiles Zinc finger RING-type profile. 1119 1161 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00059 Bma12g01234 CCT
Bma08g00059 Bma12g01234 ECH
Bma03g00898 Bma08g00059 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00898 Bma-Chr3:8870137 Bma08g00059 Bma-Chr8:750624 5.98E-08 dispersed
Bma08g00059 Bma-Chr8:750624 Bma12g01010 Bma-Chr12:42183947 4.21E-11 dispersed
Bma08g00059 Bma-Chr8:750624 Bma12g01234 Bma-Chr12:45293119 2.81E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00059 K16276 - csv:101215023 1944.86