Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00059 | ATGGCGGCACCTTTTACGGGATTGCAACACAGAGACGGAGGTGGAGTTGCGGTGCTGTCGAGTTCGGTGAATAAGGTGGATGCGTCTGCGTCTCCTTCGTCGTCGAATGTTTGTTTGAGGAGCTCCGAGCCTAAGTCTCCTATTCTGATTTTTTTGTTCTTCCACAAAGCGATTCGTTATGAGCTTGATGCGCTTCATAGGTTTGCTATGGCCCTTGCCACCGGCCAGCGAACCGATATTCAGCCTCTTGTCAAGCGATACCATTTTCTTAGATCAATTTATAAACATCACTCCAATGCTGAAGACGAGGTAATTTTTCCAGCACTTGACATTCGTGTGAAGAATGTAGCTCAAACATACTCTCTTGAGCACAAAGGAGAAAGCAATCTTTTTGATCATCTTTTTGAGCTACTCCATGCTAGCACACAAGATGCTGAATGCTTTCCAAGGGAGTTAGCATCTTGTACCGGAGCATTGAGGACATCAGTTAGCCAACATATGGCCAAGGAAGAAGAGCAGGTCTTTCCCTTGCTCATGGAGAAGTTCTCTCTTGATGAGCAAGCATCTCTGGTCTGGCAATTCTTGTGCAGTATTCCTGTGTATATGATGGCTGAATTTCTTCCTTGGCTATCATCATCTATTTCACCAGATGAATGCCAGGATCTACGGAAGTGTTTGAGCAAAATAGTTCCCAAGGAAAAGCTTCTTCAACAGGTCATATTTACATGGATGGAAGGGACAACTGGCGCAAGCATCGTTGAAAATTGTGTCGATGATTCTTTGGGTCAATGTTGTTCTGATGCTAGCATTTGCGAATCATCCCAGAAAAAAGAGATAGTTAAAAAAGCTTGTGACGTGATGAGTGCTGGAAAAAGGAAACATTTAGAGTTTAGTGCTGATATAACCAATGTCATGGAGGCACATCCAATTAATGACATATTACTTTGGCATAACGCTATTAAAAAGGAGTTAAATGAGATAGCTGAAGAGGCTAGAAACATACAACTGTCTGGAAACTTTGATAATCTTTCAGCCTTTAATGAGAGACTACATTTCATTGCTGAAGTTTGCATCTTTCATAGCATTGCTGAAGACAAGGTTATCTTTCCCGCAGTAGATGGAGAGTTATCCTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTTAACGAGTTCAGGTGCTTGATTGAAAGTATCCAAAGTGATGGAGAAATATCTAGTTCGTCAGCTGAATTTTATGCGAAGTTGTGCTCACATGCTGATCAAATTATGGATACAATTCAGAGACATTTTAATAATGAGGAACTTCAGGTTCTTCCACTTGCTCGAAAGCACTTTAGCCTCAAAAGACAGCGTGAAATCCTATATCATAGCTTGTGCATGATGCCCTTGAAGTTAATTGAGCGAGTCTTGCCATGGCTAGTGGGGTCGTCGTCTGAAGATGAAGCTGAAAATTTCCTGAAAAACATCCAATTGGCAGCTCCAACATCAGATACTGCTTTAGTGACACTCTTTTCTGGTTGGGCTTGCAAGGCTCGTAATCGAGGTTTATGCTTGTCTTCAAGAGTGACTGGCAGCTGTCCAGTAAAGAGGTTCTTTGAAATTGAAGAAACTTTTGTCCCATCATTCTGTTCTTGTGCCTCTGTGGTGTCTGCAAGAGAGACTGCATCATCAACTAACAGTGAAAGACCAGCAAAACGAAATGTCTCAGTTTCGTGCAAAAGTTGTGTTTCCTCTAGCTGCTCAGAGACGGCTAATTTGCAGCAGTCTTGCTGTAATGATGAGACTTGTTGTGTCCCGGGCTTAGGAGTCGATAGCAATAATCTGGGGTTGAGTTCTCTTTTTACAACAAAGTCTTTGTGTTCTTTATCTCCCATCTCTGGTGCCCCTTCTCTCAATTCGAGCCTTTTCTCATGGGAAACAGATATTAGCTTTTCTGATATCGGGCCTTCAGGACGACCTATTGATACTATTTTTAAGTTTCATAAAGCTATAAGAAAAGACTTGGAGTATTTAGATGTGGAATCTGGAAAGCTTAATCAATGTGATGAGACATCCCTAAGGCAATTTATTGGTAGATTTCGCCTGCTATGGGGATTGTATCGAGCTCATAGTAATGCTGAAGATGATATAGTGTTTCCTGCTCTAGAGTCTAAAGAGGCATTGCATAATGTCAGTCACTCTTACACGCTGGACCATAAACAGGAGGAAAGGTTATTTGAAGACATTTCAAGTGTTCTTTTGGACCTTTCTCATCTCCATGTAAACAGCCCGTTGGACGTTGATTCGCCCACAAATAGCTATAACTCTATGGGAAAAAAGTATGTTGAGCTAGCTACGAAGCTTCAAGGAATGTGCAAATCTATTAGAGTGACTTTAGATCAGCATATCTTCAGGGAAGAACTTGAACTATGGCCATTGTTCGGAAAACATTTCTCTGTGGAGGAGCAAGATAAAATAGTTGGACGCATCATTGGAACAACAGGTGCAGAAGTTCTCCAATCAATGTTGCCATGGGTAACTTCAGCATTGACGCAGGATGAACAGAATATAATGATGGATACATGGAAGCAAGCCACAAAGAACACAATGTTCAATGAGTGGCTCAATGAATGTTGGAAAGGATCTGAGGCATCGACCATACGTACGGGAACATTGGAATCTGATACTACTCAAAAAGGTGTTGAGATTCGAGAAGGCGTGAATCAGTGCGATCAGTTGTTTAAGCCTGGTTGGAAGGATATTTTCCGAATGAATCAAAATGAGATTGAATCAGAGATAAGAAAAGTCTACCAGGATTTGACTCTTGATCCAAGAAGAAAGGCATATCTGGTTCAGAATCTTATGACCAGTCGCTGGATTGCCGCCCAACAGAAATTACCAGAAGTCACAGCGGGAAGTTCTAATAGTGAAGATGTATTGGAACGTTCACCATCCTATAGTGACCCAGAAAAAAGTAAATTTGGGTGTGAACATTACAAAAGAAACTGCAAACTCCTTGCTGCTTGCTGTGGCAAGTTGTTTACTTGTCGGTTTTGCCACGATAATGTTAGCGACCATTCTATGGATAGGAAAGCAACCTCTGAGATGATGTGCATGCGCTGTATGACAATTCAGGCAGTTGCGCCTACATGTTCAACTCCTTCATGCAATGGATTCTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTTGACGATGAAAGAACTGTATATCATTGCCCATTTTGCAACTTGTGTCGTCTGGGGAAAGGTCTTGGACTTGACTTTTTTCACTGTATGACGTGCAATTGTTGTCTGGGGATAAAGGTAGTGAATCACAAGTGCCTTGAAAAAAGTTTGGAAACAAACTGTCCCATCTGCTGTGATTTCCTGTTCACATCCAGTGCAACAGTCAGAGCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATATACTTGTAGCCATTACACGTGTCCTATTTGCAGCAAATCATTAGGAGACATGGCGGTTTATTTTGGCATGCTTGACGCACTGTTGGCTGCTGAAGAGCTTCCAGACGAGTACAGGGGTCGTTGTCAGCAGGATATATTATGCAATGACTGTGATAGGAAGGGGACGTCAAGATTTCACTGGCTATATCACAAGTGTGGATCTTGTGGTTCATACAACACCCGAGTCATCAAGAGCGAGACTGCAAATGCAGATTGCTCGGAATCAAATCGATGA | 3723 | 41.96 | MAAPFTGLQHRDGGGVAVLSSSVNKVDASASPSSSNVCLRSSEPKSPILIFLFFHKAIRYELDALHRFAMALATGQRTDIQPLVKRYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLHASTQDAECFPRELASCTGALRTSVSQHMAKEEEQVFPLLMEKFSLDEQASLVWQFLCSIPVYMMAEFLPWLSSSISPDECQDLRKCLSKIVPKEKLLQQVIFTWMEGTTGASIVENCVDDSLGQCCSDASICESSQKKEIVKKACDVMSAGKRKHLEFSADITNVMEAHPINDILLWHNAIKKELNEIAEEARNIQLSGNFDNLSAFNERLHFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEESQFNEFRCLIESIQSDGEISSSSAEFYAKLCSHADQIMDTIQRHFNNEELQVLPLARKHFSLKRQREILYHSLCMMPLKLIERVLPWLVGSSSEDEAENFLKNIQLAAPTSDTALVTLFSGWACKARNRGLCLSSRVTGSCPVKRFFEIEETFVPSFCSCASVVSARETASSTNSERPAKRNVSVSCKSCVSSSCSETANLQQSCCNDETCCVPGLGVDSNNLGLSSLFTTKSLCSLSPISGAPSLNSSLFSWETDISFSDIGPSGRPIDTIFKFHKAIRKDLEYLDVESGKLNQCDETSLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEERLFEDISSVLLDLSHLHVNSPLDVDSPTNSYNSMGKKYVELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNIMMDTWKQATKNTMFNEWLNECWKGSEASTIRTGTLESDTTQKGVEIREGVNQCDQLFKPGWKDIFRMNQNEIESEIRKVYQDLTLDPRRKAYLVQNLMTSRWIAAQQKLPEVTAGSSNSEDVLERSPSYSDPEKSKFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCMTIQAVAPTCSTPSCNGFSMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGLDFFHCMTCNCCLGIKVVNHKCLEKSLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPDEYRGRCQQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRVIKSETANADCSESNR | 1240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 750624 | 759133 | + | Bma027055.1 | Bma08g00059 | 86886 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00059 | 1240 | Pfam | Zinc-ribbon | 1166 | 1224 | IPR039512 | - | |
Bma08g00059 | 1240 | PANTHER | CHY ZINC FINGER PROTEIN | 28 | 1235 | - | - | |
Bma08g00059 | 1240 | SUPERFAMILY | Zinc hairpin stack | 1056 | 1112 | IPR037275 | - | |
Bma08g00059 | 1240 | Pfam | Ring finger domain | 1118 | 1160 | IPR001841 | - | |
Bma08g00059 | 1240 | Gene3D | nmb1532 protein domain like | 46 | 196 | - | - | |
Bma08g00059 | 1240 | Gene3D | nmb1532 protein domain like | 314 | 458 | - | - | |
Bma08g00059 | 1240 | SMART | ring_2 | 1119 | 1160 | IPR001841 | - | |
Bma08g00059 | 1240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1112 | 1163 | IPR013083 | - | |
Bma08g00059 | 1240 | ProSiteProfiles | Zinc finger CHY-type profile. | 983 | 1052 | IPR008913 | GO:0008270 | |
Bma08g00059 | 1240 | SUPERFAMILY | RING/U-box | 1118 | 1164 | - | - | |
Bma08g00059 | 1240 | Gene3D | - | 1191 | 1234 | - | - | |
Bma08g00059 | 1240 | SUPERFAMILY | CHY zinc finger-like | 982 | 1046 | IPR037274 | GO:0008270 | |
Bma08g00059 | 1240 | MobiDBLite | consensus disorder prediction | 965 | 985 | - | - | |
Bma08g00059 | 1240 | CDD | Hr-like | 50 | 176 | - | - | |
Bma08g00059 | 1240 | CDD | Hr-like | 312 | 440 | - | - | |
Bma08g00059 | 1240 | Pfam | Hemerythrin HHE cation binding domain | 654 | 807 | IPR012312 | - | |
Bma08g00059 | 1240 | Pfam | Hemerythrin HHE cation binding domain | 308 | 442 | IPR012312 | - | |
Bma08g00059 | 1240 | Pfam | Hemerythrin HHE cation binding domain | 52 | 178 | IPR012312 | - | |
Bma08g00059 | 1240 | CDD | RING-H2_Pirh2 | 1118 | 1161 | - | - | |
Bma08g00059 | 1240 | Pfam | CHY zinc finger | 990 | 1065 | IPR008913 | GO:0008270 | |
Bma08g00059 | 1240 | Gene3D | nmb1532 protein domain like | 649 | 871 | - | - | |
Bma08g00059 | 1240 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1055 | 1118 | IPR017921 | - | |
Bma08g00059 | 1240 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 28 | 1235 | - | - | |
Bma08g00059 | 1240 | CDD | Hr-like | 656 | 806 | - | - | |
Bma08g00059 | 1240 | ProSiteProfiles | Zinc finger RING-type profile. | 1119 | 1161 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00059 | Bma12g01234 | CCT | |
Bma08g00059 | Bma12g01234 | ECH | |
Bma03g00898 | Bma08g00059 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00898 | Bma-Chr3:8870137 | Bma08g00059 | Bma-Chr8:750624 | 5.98E-08 | dispersed | |
Bma08g00059 | Bma-Chr8:750624 | Bma12g01010 | Bma-Chr12:42183947 | 4.21E-11 | dispersed | |
Bma08g00059 | Bma-Chr8:750624 | Bma12g01234 | Bma-Chr12:45293119 | 2.81E-19 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00059 | K16276 | - | csv:101215023 | 1944.86 |