Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00068 ATGTCTACTCCATCTTTTACCTCTGCCTCCTCCATCTCCCTCCCTTTCTTCTTCTCCAATTCCACTTCCTCTGGTTGCTACAGGTCTTGCGTTAACGTTGATGCTTCGTCTCTCTCGTCATCATCACTGTCGTTTTCGACGAGCTCTGTTAGCCGTAGACGGTGCTATTCTCTCAGAGGGGGACGGTATGACGAGGAGCATGAACTTGTGCGCCAGTGGATTGAAGCTGATCAGCCTTTTCCTTCTGACGACAGGTTTACAGTTGTATCATATAACATTTTGGGCGATAGAAATGCATGGAAACACAGATATCTATATGAAAATGTTCCTCCCCGCTATCTTAAGTGGGACCAGCGCAAGAAAATTATATGCAGTGAACTTTTTGAATTGAACCCCGACATAATCTGCTTTCAAGAAGTGGATAATTTCTTTGATCTTTCTGACATCTTTGTCAAAGCTGGATATGTTGGTTCTTACAAGAGACGCACTGGGGATTCTGTTGATGGTTGTGCTATATTTTGGAAGTCTGACAAGTTTGGACTATTAGATGAAGAGGGCATTGAATTCAAGAGTTTTAATCTCCGTGATAATGTTGCTCAGCTCTGTCTTTTCGAGATGCCTAAAGCAGGATCAAGAAAATTATTGATTGGTAATATCCATGTGCTTTATTACCCAAGGAGGGGGGATGTTAAATTAGGTCAAATTCGTGTGTTGTTATCTAGGGCGCAGATCCTGTCAGAGAAATGGTGTAAAGTTCCATTTGTTCTTGCTGGTGATTTTAATAGTACCCCACAGAGTGCAATATACAAGTATTTATCTTCATCAAAGCTAAATATTATGTTATTTGACCGAAGAGAGATGTCAGGACAGACACATTCTCATCCTTCTAAAGTTGTAGGCGTCAAGGAATGCTGGACAAATGAAGAGGTAAAACTTGCAACTGGCGATGTTGACTGCTACTTAGCGGTGCATCCCTTCAACCTTATGAGCTCATATGCGACAGTAAGGGGCTCTGCTAGAACTCGGTTTTCGAATGGCGAACCTTTGGCTACTTCGTTCCACTCTAAATTTCTTGGAACAGTAGACTATTTATGGTAA 1098 41.89 MSTPSFTSASSISLPFFFSNSTSSGCYRSCVNVDASSLSSSSLSFSTSSVSRRRCYSLRGGRYDEEHELVRQWIEADQPFPSDDRFTVVSYNILGDRNAWKHRYLYENVPPRYLKWDQRKKIICSELFELNPDIICFQEVDNFFDLSDIFVKAGYVGSYKRRTGDSVDGCAIFWKSDKFGLLDEEGIEFKSFNLRDNVAQLCLFEMPKAGSRKLLIGNIHVLYYPRRGDVKLGQIRVLLSRAQILSEKWCKVPFVLAGDFNSTPQSAIYKYLSSSKLNIMLFDRREMSGQTHSHPSKVVGVKECWTNEEVKLATGDVDCYLAVHPFNLMSSYATVRGSARTRFSNGEPLATSFHSKFLGTVDYLW 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 856491 867638 + Bma027067.3 Bma08g00068 86895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00068 365 SUPERFAMILY DNase I-like 79 272 IPR036691 -
Bma08g00068 365 Gene3D Endonuclease/exonuclease/phosphatase 63 365 IPR036691 -
Bma08g00068 365 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 39 365 - -
Bma08g00068 365 Pfam Endonuclease/Exonuclease/phosphatase family 89 272 IPR005135 GO:0003824
Bma08g00068 365 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3 39 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00068 - - - jre:108994592 446.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02156 Bma-Chr1:78183844 Bma08g00068 Bma-Chr8:856491 4.39E-11 dispersed
Bma05g01207 Bma-Chr5:51479037 Bma08g00068 Bma-Chr8:856491 5.93E-07 dispersed
Bma08g00068 Bma-Chr8:856491 Bma14g00645 Bma-Chr14:6950196 8.67E-20 dispersed
Bma08g00064 Bma-Chr8:784419 Bma08g00068 Bma-Chr8:856491 2.08E-92 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g352 . . . Bda15g00522 Bpe12g00687 . . . . . Cma10g00244 . Car10g00230 . . . . . . . . . . . Cla06g01480 Cam06g1635 Cec06g1697 Cco06g1692 Clacu06g1601 Cmu06g1550 Cre06g2362 . . . . . . . . . . . . . . . Bma08g00068 . Cmo10g00261 . . . . . . Cpe18g00749 . . . . . . . . . . . . . . Lsi06g01343 Csa01g00369 Chy02g02376 Cme02g01758
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011598 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 0 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00068 Bma_Chr08 FPKM 15.424595 17.287689 21.385883 18.400249 29.022928 24.155687 29.353798 31.218826 33.715385 34.406033