Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00073 TCGTCTCCAATGGAAGCTGCTCCTCCTCCATCCCTTTCTCCGACCAACTTCCCCGAAGATTTCTCCTTTCTTTATTCCAATTCGCAGTTCCGACAACTGCCCGAGCCTGACGTGCATATCGTCACTTCCGGTGGACTCCGCATCCCGGTTCACTCCGGCATTCTTGCCTCGATCTCAGCGGTATTGGGGAGGATTATAGAAAGTCCTCGAAAGCGTCGGAGTTCTACCGGAGTAATTCCGATTCTCGGCGTCCCAAACGACGCTGTTATTGCATTCGTTGGGTTCGTCTACACCTCAATGTGCTCGGAGGAAAATCTGGAGAAGTACGGAATTCATCTTCTTGCTCTAGCTCATGTCTACAGGATCCCACAGCTGAAGCAGAAATGCATCAAGGACTTGGCTTCTCGACGGCTTTCGATCGATAACGTAGTCGATGTGCTTCAACTGGCTAGGCTCTGCGACGCTCCAGATCTTCACCTGAAGTGCATGAAGTTCATCTTAAACAACTTCAAGGCCATAGGGAAGACAGAGGGTTGGAAATTCTTGCAAAAACACGATCCCTGGTTGGAGCTTCAGGTCATTGAGTTCATCGACGAGGCTGAATTGAGGAAGAAGAGATCAAGGAGGCATACCGAGGAGAGAAGCTTGTATCTGCAACTAAACGAGGCAATGGAGTGCTTGGAGCACATCTGCACCGAAGGATGCACGAGCGTCGGACCTTACTATACCAACCCCAACAAGAAGAAGCAGCCTTGTAAAAACTTCTCTACTTGCCATGGTCTTCAGCTTCTGATCAAACATTTCGCCGTCTGTACGAAGAGGATCAAAGGTGGATGTCCACATTGCAAAAGAATGTGGCAGCTTTTGAGGCTTCACTCTTCAATCTGTGACCAATCTGATGATTGCAGAGTCCCTCTTTGCAGCAGGCAATTTAAAGGGAGAAAGCTGCAAGAGAAAAGGAAAGATAAGGTGAGGTGGAAGCTGCTGGTGAGAAATGTAATGTCTGCTAAAGCCTTGTACTTGCTGTCTCTGCAAAAGAGGAGGAGAGGAGACTCCATTGGCAGCCATGGAAGTAGAAACTTCAGATTGCAGGATGTTCATTAA 1104 48.37 SSPMEAAPPPSLSPTNFPEDFSFLYSNSQFRQLPEPDVHIVTSGGLRIPVHSGILASISAVLGRIIESPRKRRSSTGVIPILGVPNDAVIAFVGFVYTSMCSEENLEKYGIHLLALAHVYRIPQLKQKCIKDLASRRLSIDNVVDVLQLARLCDAPDLHLKCMKFILNNFKAIGKTEGWKFLQKHDPWLELQVIEFIDEAELRKKRSRRHTEERSLYLQLNEAMECLEHICTEGCTSVGPYYTNPNKKKQPCKNFSTCHGLQLLIKHFAVCTKRIKGGCPHCKRMWQLLRLHSSICDQSDDCRVPLCSRQFKGRKLQEKRKDKVRWKLLVRNVMSAKALYLLSLQKRRRGDSIGSHGSRNFRLQDVH 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 908833 910615 + Bma027072.1 Bma08g00073 86900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00073 367 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 26 352 IPR044513 -
Bma08g00073 367 SUPERFAMILY POZ domain 20 134 IPR011333 -
Bma08g00073 367 SMART BTB_4 36 137 IPR000210 GO:0005515
Bma08g00073 367 Pfam BTB/POZ domain 29 134 IPR000210 GO:0005515
Bma08g00073 367 CDD BACK 139 198 - -
Bma08g00073 367 Pfam TAZ zinc finger 221 307 IPR000197 -
Bma08g00073 367 Gene3D TAZ domain 210 337 IPR035898 -
Bma08g00073 367 Gene3D - 138 209 - -
Bma08g00073 367 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 26 352 - -
Bma08g00073 367 ProSiteProfiles BTB domain profile. 36 105 IPR000210 GO:0005515
Bma08g00073 367 SUPERFAMILY TAZ domain 212 310 IPR035898 -
Bma08g00073 367 Gene3D Potassium Channel Kv1.1; Chain A 10 135 IPR011333 -
Bma08g00073 367 SMART TAZ_2 214 308 IPR000197 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00073 - - - zju:107418254 498.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00073 Bma12g01066 CCT
Bma06g00237 Bma08g00073 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00237 Bma-Chr6:3156819 Bma08g00073 Bma-Chr8:908833 8.02E-99 dispersed
Bma08g00073 Bma-Chr8:908833 Bma14g01858 Bma-Chr14:39946853 5.51E-57 dispersed
Bma09g00012 Bma-Chr9:316255 Bma08g00073 Bma-Chr8:908833 6.43E-89 transposed
Bma12g01066 Bma-Chr12:42825365 Bma08g00073 Bma-Chr8:908833 3.64E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57701 PF00651 BTB 1.30E-10 CL0033 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00073 Bma_Chr08 FPKM 27.222891 28.371145 11.876627 12.803165 17.026495 16.1884 15.981373 13.778223 14.302507 12.542478