Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00083 ATGGATCCGAATCCGAAAAGGTACCCAATCCTCTCTTACGTTATGGCCCGAATCCCTACTATCGGGCCTCGGACGTCCCCCGCCGCCTCCAATTTCAGCTCCCTCCAATTCGATGTAGAACAGCCGGACACGGCGCGGCTTCGTCCGCCTGATCCTTCGGCGTCGTCTTTCGGTCAGATCGTGGACCACATGCCTCATCTGTCGGACCCAAATGTTCTGGCTTCTATGACTCGCGCCGTGACGGACGTGGCTCAGACCCGATCTGTGCTTAAAACTCTCGGCGAAAGACCGGACCACGAGACCGTCGATACCGCCAAGGCTAAGCTCGCTGAGATCGAGGCTAATTTGTCTAAACAGCTTGAGGAGATAGTTCTTTCTCCGCGGCCTGTGGAATTGGATCGCTTCGAGTGGCGAGCATACCAGGCAGAGAAGGAGATGCAGTGCCGAGAATTAGCCGAGAAGGAAAAGTCGATTTATAAGGCGGTGATTCAGTTGGATGAGATGCATGAGGCATATGAAAAGTTGTTGAAGGAAGCTGAAGAGCGGTTGGTAAAGATTTACCAGTCGGCAGAGCGTGGGGAGGAAGAACAGTATGTGGCTCCAGTAACTGATGAGATTAATGAGGAGGTGGTTGGAATTCTTCATGATGCAAATGGCAATAAGATGGAGCACATTGATATTTCCGGTCGCCGGTTGCGGATTTTGCCAGAAGCGTTCGGCCATATTTGTTGCTTGACTCTGCTCAATGTTTCCAGTAATCAACTCGAGGTTATTCCTGACTCCATAGCTGGTTTGGAAAATCTCGAGGAGCTAAATGCCTCTTCCAATCTTTTGGTGTCTCTTCCACATTCGATTGGATTGTTGCAAAATTTGAAATTCTTGAATGTTTCTGGGAACAAGTTAAATTACCTTCCAGATTCTATATGCCACTGCAGGTCATTGGTGGAGTTGGACGTGAGCTTTAATAATTTAACATACTTGCCAACAAACATTGGTTATGAATTGGTGAAATTGAGGAAGCTTTCTATCCAATTGAACAAGATACGTTTCCTCCCTTCCTCTGTTTGTGAGATGAGATCTCTGTGCCATTTAGATGCCCATTTCAACGAGCTCCGTGGGCTTCCACTTTCAATTGGGAGATTGGTTAATCTCGAGGTTCTCAACTTGAGCAGTAACTTCAGTGATCTGAAAGAACTTCCAGATACCCTTGGTGATTTAATCAATCTAAAGGAACTTGATCTCAGCAACAATCAGATTCAGGCACTTCCCGATACATTTGGTCGTCTTGACAATTTAGTCAAACTAAACTTGGACCAAAATCCTATTGTGATTCCACCCGTGGAAGTTGTGAAAGAAGGTGTAGAAGCAGTGAAAGTGTACATGGCCAAGAGATGGCTTGACATTCTGGTGGAGGAAGAGGAAAAGAGCATGCTTGAAGAACAAGAAATGGGACAGACTGGATGGCTGACACGTAGCACTTCCTGGCTGAAGAATTATGCTTCTGGTGTGACAGAATATTTGACATCTCCCAGAACTCCCAGAACTCCCCGGGACCCTTATCTCGATCAACAACTGTAG 1578 46.83 MDPNPKRYPILSYVMARIPTIGPRTSPAASNFSSLQFDVEQPDTARLRPPDPSASSFGQIVDHMPHLSDPNVLASMTRAVTDVAQTRSVLKTLGERPDHETVDTAKAKLAEIEANLSKQLEEIVLSPRPVELDRFEWRAYQAEKEMQCRELAEKEKSIYKAVIQLDEMHEAYEKLLKEAEERLVKIYQSAERGEEEQYVAPVTDEINEEVVGILHDANGNKMEHIDISGRRLRILPEAFGHICCLTLLNVSSNQLEVIPDSIAGLENLEELNASSNLLVSLPHSIGLLQNLKFLNVSGNKLNYLPDSICHCRSLVELDVSFNNLTYLPTNIGYELVKLRKLSIQLNKIRFLPSSVCEMRSLCHLDAHFNELRGLPLSIGRLVNLEVLNLSSNFSDLKELPDTLGDLINLKELDLSNNQIQALPDTFGRLDNLVKLNLDQNPIVIPPVEVVKEGVEAVKVYMAKRWLDILVEEEEKSMLEEQEMGQTGWLTRSTSWLKNYASGVTEYLTSPRTPRTPRDPYLDQQL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 978383 980761 - Bma027082.1 Bma08g00083 86910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00083 525 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Bma08g00083 525 Coils Coil 102 122 - -
Bma08g00083 525 ProSiteProfiles Leucine-rich repeat profile. 290 311 IPR001611 GO:0005515
Bma08g00083 525 SMART LRR_bac_2 245 261 - -
Bma08g00083 525 SMART LRR_bac_2 288 307 - -
Bma08g00083 525 SMART LRR_bac_2 265 284 - -
Bma08g00083 525 SMART LRR_bac_2 406 425 - -
Bma08g00083 525 SMART LRR_bac_2 381 402 - -
Bma08g00083 525 SMART LRR_bac_2 311 330 - -
Bma08g00083 525 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Bma08g00083 525 SUPERFAMILY L domain-like 218 442 - -
Bma08g00083 525 Gene3D Ribonuclease Inhibitor 110 334 IPR032675 -
Bma08g00083 525 PANTHER LEUCINE-RICH REPEAT-CONTAINING 55 504 - -
Bma08g00083 525 Pfam Leucine rich repeat 383 442 IPR001611 GO:0005515
Bma08g00083 525 Pfam Leucine rich repeat 245 301 IPR001611 GO:0005515
Bma08g00083 525 Coils Coil 162 196 - -
Bma08g00083 525 SMART LRR_typ_2 406 429 IPR003591 -
Bma08g00083 525 SMART LRR_typ_2 381 405 IPR003591 -
Bma08g00083 525 SMART LRR_typ_2 265 287 IPR003591 -
Bma08g00083 525 SMART LRR_typ_2 242 264 IPR003591 -
Bma08g00083 525 SMART LRR_typ_2 335 358 IPR003591 -
Bma08g00083 525 SMART LRR_typ_2 312 334 IPR003591 -
Bma08g00083 525 SMART LRR_typ_2 288 311 IPR003591 -
Bma08g00083 525 Gene3D Ribonuclease Inhibitor 335 461 IPR032675 -
Bma08g00083 525 PANTHER PLANT INTRACELLULAR RAS GROUP-RELATED LRR 9-RELATED 55 504 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00083 - - - mnt:21385646 680.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00083 Bma12g01054 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00083 Bma-Chr8:978383 Bma14g01819 Bma-Chr14:39094571 9.77E-144 dispersed
Bma11g00698 Bma-Chr11:16524303 Bma08g00083 Bma-Chr8:978383 7.35E-15 transposed
Bma12g01054 Bma-Chr12:42635482 Bma08g00083 Bma-Chr8:978383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00083 Bma_Chr08 FPKM 27.693243 30.769005 27.717894 28.487982 29.642138 27.326916 27.549461 27.37425 24.786469 26.400627