Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00088 | ATGGCTTCATCAAGCTCGTACAATTCACCATGTGCGGCCTGCAAGTTCTTGAGGAGAAAGTGTATGCCCGGCTGCATATTTGCGCCGTATTTCCCACCCGAGGAGCCTCAGAAGTTCGCCAACGTCCACAAGATATTCGGAGCCAGCAATGTTACCAAGCTCCTCAACGAACTCCTCCCCCACCAACGCGAAGACGCAGTCAATTCCCTTGCCTACGAGGCCGAGAACCCAAAAAAATATATATATATTATTCATTTAAAAGAATTTAACCCCGTCTACGGCTGCGTAGGAGCCATCTCCTTCCTCCAACGCCAAGTCCAACGGCTTCAGAAAGAGCTCGATGCCGCCAATGCCGACCTCATCCGCTACGCTTGCTCTGAGATCCCTTCCTCCATCTCCGCACCGTCCGGGGTAAGCGTGTTTGGCCGGAGAGGCGGAAACAGAGGAGGAGGTGGTGGAGGTGGAGGGTATTATCAGCCTCCTTCTTTCCCTATGCCCTTTACCCCTCCTTGGAATGATGATGGGAACATTCATGGAGGAGGAGGAGCAGGTCAAGGAAGTATGTGA | 567 | 52.56 | MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAENPKKYIYIIHLKEFNPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACSEIPSSISAPSGVSVFGRRGGNRGGGGGGGGYYQPPSFPMPFTPPWNDDGNIHGGGGAGQGSM | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1029617 | 1030538 | + | Bma027087.1 | Bma08g00088 | 86915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00088 | 188 | Coils | Coil | 99 | 126 | - | - | |
Bma08g00088 | 188 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 117 | IPR004883 | - | |
Bma08g00088 | 188 | PANTHER | ELONGATED PETIOLULE 1 | 1 | 187 | - | - | |
Bma08g00088 | 188 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 187 | - | - | |
Bma08g00088 | 188 | ProSiteProfiles | LOB domain profile. | 9 | 120 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00088 | Bma12g01049 | CCT | |
Bma06g00210 | Bma08g00088 | CCT | |
Bma08g00088 | Bma12g01049 | ECH | |
Bma06g00210 | Bma08g00088 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00210 | Bma-Chr6:2517399 | Bma08g00088 | Bma-Chr8:1029617 | 1.15E-70 | dispersed | |
Bma08g00088 | Bma-Chr8:1029617 | Bma14g01484 | Bma-Chr14:30097229 | 1.23E-68 | dispersed | |
Bma12g01049 | Bma-Chr12:42560363 | Bma08g00088 | Bma-Chr8:1029617 | 1.95E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57703 | PF03195 | LOB | 4.40E-35 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00088 | - | - | pop:7453789 | 250.751 |