Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00088 ATGGCTTCATCAAGCTCGTACAATTCACCATGTGCGGCCTGCAAGTTCTTGAGGAGAAAGTGTATGCCCGGCTGCATATTTGCGCCGTATTTCCCACCCGAGGAGCCTCAGAAGTTCGCCAACGTCCACAAGATATTCGGAGCCAGCAATGTTACCAAGCTCCTCAACGAACTCCTCCCCCACCAACGCGAAGACGCAGTCAATTCCCTTGCCTACGAGGCCGAGAACCCAAAAAAATATATATATATTATTCATTTAAAAGAATTTAACCCCGTCTACGGCTGCGTAGGAGCCATCTCCTTCCTCCAACGCCAAGTCCAACGGCTTCAGAAAGAGCTCGATGCCGCCAATGCCGACCTCATCCGCTACGCTTGCTCTGAGATCCCTTCCTCCATCTCCGCACCGTCCGGGGTAAGCGTGTTTGGCCGGAGAGGCGGAAACAGAGGAGGAGGTGGTGGAGGTGGAGGGTATTATCAGCCTCCTTCTTTCCCTATGCCCTTTACCCCTCCTTGGAATGATGATGGGAACATTCATGGAGGAGGAGGAGCAGGTCAAGGAAGTATGTGA 567 52.56 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAENPKKYIYIIHLKEFNPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACSEIPSSISAPSGVSVFGRRGGNRGGGGGGGGYYQPPSFPMPFTPPWNDDGNIHGGGGAGQGSM 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1029617 1030538 + Bma027087.1 Bma08g00088 86915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00088 188 Coils Coil 99 126 - -
Bma08g00088 188 Pfam Lateral organ boundaries (LOB) domain 10 117 IPR004883 -
Bma08g00088 188 PANTHER ELONGATED PETIOLULE 1 1 187 - -
Bma08g00088 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 187 - -
Bma08g00088 188 ProSiteProfiles LOB domain profile. 9 120 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00088 Bma12g01049 CCT
Bma06g00210 Bma08g00088 CCT
Bma08g00088 Bma12g01049 ECH
Bma06g00210 Bma08g00088 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00210 Bma-Chr6:2517399 Bma08g00088 Bma-Chr8:1029617 1.15E-70 dispersed
Bma08g00088 Bma-Chr8:1029617 Bma14g01484 Bma-Chr14:30097229 1.23E-68 dispersed
Bma12g01049 Bma-Chr12:42560363 Bma08g00088 Bma-Chr8:1029617 1.95E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57703 PF03195 LOB 4.40E-35 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00088 - - pop:7453789 250.751