Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00088 ATGGCTTCATCAAGCTCGTACAATTCACCATGTGCGGCCTGCAAGTTCTTGAGGAGAAAGTGTATGCCCGGCTGCATATTTGCGCCGTATTTCCCACCCGAGGAGCCTCAGAAGTTCGCCAACGTCCACAAGATATTCGGAGCCAGCAATGTTACCAAGCTCCTCAACGAACTCCTCCCCCACCAACGCGAAGACGCAGTCAATTCCCTTGCCTACGAGGCCGAGAACCCAAAAAAATATATATATATTATTCATTTAAAAGAATTTAACCCCGTCTACGGCTGCGTAGGAGCCATCTCCTTCCTCCAACGCCAAGTCCAACGGCTTCAGAAAGAGCTCGATGCCGCCAATGCCGACCTCATCCGCTACGCTTGCTCTGAGATCCCTTCCTCCATCTCCGCACCGTCCGGGGTAAGCGTGTTTGGCCGGAGAGGCGGAAACAGAGGAGGAGGTGGTGGAGGTGGAGGGTATTATCAGCCTCCTTCTTTCCCTATGCCCTTTACCCCTCCTTGGAATGATGATGGGAACATTCATGGAGGAGGAGGAGCAGGTCAAGGAAGTATGTGA 567 52.56 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAENPKKYIYIIHLKEFNPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACSEIPSSISAPSGVSVFGRRGGNRGGGGGGGGYYQPPSFPMPFTPPWNDDGNIHGGGGAGQGSM 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1029617 1030538 + Bma027087.1 Bma08g00088 86915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00088 188 Coils Coil 99 126 - -
Bma08g00088 188 Pfam Lateral organ boundaries (LOB) domain 10 117 IPR004883 -
Bma08g00088 188 PANTHER ELONGATED PETIOLULE 1 1 187 - -
Bma08g00088 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 187 - -
Bma08g00088 188 ProSiteProfiles LOB domain profile. 9 120 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00088 - - - pop:7453789 250.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00088 Bma12g01049 CCT
Bma06g00210 Bma08g00088 CCT
Bma08g00088 Bma12g01049 ECH
Bma06g00210 Bma08g00088 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00210 Bma-Chr6:2517399 Bma08g00088 Bma-Chr8:1029617 1.15E-70 dispersed
Bma08g00088 Bma-Chr8:1029617 Bma14g01484 Bma-Chr14:30097229 1.23E-68 dispersed
Bma12g01049 Bma-Chr12:42560363 Bma08g00088 Bma-Chr8:1029617 1.95E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g01181 . 3 215 AS2 family AT1G65620 69.7 9.0e-81 296.6
Bma02g00579 . 3 214 AS2 family AT1G65620 69.2 2.1e-77 285.4
Bma12g01049 BCT,CCT,ECH 3 132 AS2 family AT1G65620 66.2 3.2e-46 181.8
Bma06g00422 . 2 110 AS2 family AT1G65620 78.9 7.2e-46 180.6
Bma06g00210 BCT,CCT,ECH 3 118 AS2 family AT1G65620 69.8 6.7e-44 174.1
Bma03g01098 . 2 110 AS2 family AT1G65620 76.1 7.4e-43 170.6
Bma14g01484 . 2 115 AS2 family AT1G65620 69.3 2.8e-42 168.7
Bma14g01508 . 1 114 AS2 family AT1G65620 69.3 2.8e-42 168.7
Bma08g00088 CCT,ECH 3 123 AS2 family AT1G65620 66.1 9.1e-41 163.7
Bma06g00422 . 1 137 AS2 family AT5G66870 75.9 1.3e-54 210.3
Bma03g01098 . 1 136 AS2 family AT5G66870 75.7 1.7e-54 209.9
Bma01g01181 . 3 111 AS2 family AT5G66870 78.0 7.3e-45 177.9
Bma02g00579 . 3 111 AS2 family AT5G66870 78.0 9.6e-45 177.6
Bma12g01049 BCT,CCT,ECH 1 113 AS2 family AT5G66870 69.9 2.4e-40 162.9
Bma14g01484 . 2 115 AS2 family AT5G66870 65.8 1.3e-38 157.1
Bma14g01508 . 1 114 AS2 family AT5G66870 65.8 1.3e-38 157.1
Bma06g00210 BCT,CCT,ECH 5 113 AS2 family AT5G66870 66.1 1.7e-38 156.8
Bma01g01181 . 5 111 AS2 family AT2G23660 68.2 1.6e-39 160.2
Bma12g01049 BCT,CCT,ECH 8 113 AS2 family AT2G23660 65.1 2.1e-39 159.8
Bma02g00579 . 5 111 AS2 family AT2G23660 68.2 2.1e-39 159.8
Bma06g00210 BCT,CCT,ECH 8 113 AS2 family AT2G23660 64.2 6.6e-38 154.8
Bma14g01484 . 9 115 AS2 family AT2G23660 59.8 9.5e-37 151.0
Bma14g01508 . 8 114 AS2 family AT2G23660 59.8 9.5e-37 151.0
Bma14g01484 . 6 116 AS2 family AT3G27650 82.9 9.2e-52 199.9
Bma14g01508 . 5 115 AS2 family AT3G27650 82.9 9.2e-52 199.9
Bma12g01049 BCT,CCT,ECH 4 114 AS2 family AT3G27650 76.6 1.5e-46 182.6
Bma06g00210 BCT,CCT,ECH 4 113 AS2 family AT3G27650 76.4 5.8e-46 180.6
Bma08g00088 CCT,ECH 4 124 AS2 family AT3G27650 71.1 2.0e-43 172.2
Bma01g01181 . 1 111 AS2 family AT3G27650 67.6 8.6e-42 166.8
Bma02g00579 . 1 111 AS2 family AT3G27650 67.6 1.1e-41 166.4
Bma06g00422 . 4 112 AS2 family AT3G27650 65.1 3.4e-38 154.8
Bma12g01049 BCT,CCT,ECH 3 113 AS2 family AT5G63090 91.0 9.4e-56 213.4
Bma06g00210 BCT,CCT,ECH 3 113 AS2 family AT5G63090 87.4 7.9e-55 210.3
Bma14g01484 . 2 139 AS2 family AT5G63090 76.1 3.3e-53 204.9
Bma14g01508 . 1 138 AS2 family AT5G63090 76.1 3.3e-53 204.9
Bma08g00088 CCT,ECH 3 138 AS2 family AT5G63090 77.2 7.4e-53 203.8
Bma01g01181 . 1 111 AS2 family AT5G63090 74.6 2.6e-45 178.7
Bma02g00579 . 1 111 AS2 family AT5G63090 73.7 3.7e-44 174.9
Bma06g00422 . 2 110 AS2 family AT5G63090 67.9 6.1e-39 157.5
Bma08g01029 . 4 106 AS2 family AT5G63090 69.9 1.0e-38 156.8
Bma03g00230 . 4 106 AS2 family AT5G63090 69.9 1.4e-38 156.4
Bma14g00879 . 19 129 AS2 family AT5G63090 64.0 2.0e-37 152.5
Bma03g00230 . 3 115 AS2 family AT2G30130 90.3 5.7e-56 214.2
Bma08g01029 . 3 115 AS2 family AT2G30130 90.3 2.2e-55 212.2
Bma14g00879 . 18 135 AS2 family AT2G30130 71.2 5.0e-44 174.5
Bma01g01587 . 12 127 AS2 family AT2G30130 69.0 9.4e-43 170.2
Bma01g01181 . 1 108 AS2 family AT2G30130 64.8 2.0e-37 152.5
Bma12g01049 BCT,CCT,ECH 8 111 AS2 family AT2G30130 68.3 2.0e-37 152.5
Bma02g00579 . 1 108 AS2 family AT2G30130 64.8 2.7e-37 152.1
Bma08g00949 . 57 164 AS2 family AT2G30130 65.7 4.5e-37 151.4
Bma08g00958 CCT 57 164 AS2 family AT2G30130 65.7 4.5e-37 151.4
Bma14g00879 . 8 178 AS2 family AT1G31320 72.1 7.3e-63 236.9
Bma01g01587 . 1 162 AS2 family AT1G31320 65.3 1.4e-58 222.6
Bma08g01029 . 2 148 AS2 family AT1G31320 55.0 3.4e-44 174.9
Bma03g00230 . 2 112 AS2 family AT1G31320 71.2 9.9e-44 173.3
Bma08g00949 . 57 166 AS2 family AT1G31320 65.5 2.4e-37 152.1
Bma08g00958 CCT 57 166 AS2 family AT1G31320 65.5 2.4e-37 152.1
Bma01g01181 . 7 121 AS2 family AT1G31320 62.7 3.1e-37 151.8
Bma02g00579 . 7 121 AS2 family AT1G31320 62.7 4.0e-37 151.4
Bma08g01069 BCT 61 174 AS2 family AT1G31320 60.5 6.9e-37 150.6
Bma03g00188 . 16 129 AS2 family AT1G31320 61.4 9.0e-37 150.2
Bma08g00949 . 54 211 AS2 family AT2G28500 57.7 3.6e-49 191.8
Bma08g00958 CCT 54 211 AS2 family AT2G28500 57.7 3.6e-49 191.8
Bma03g00327 CCT 57 186 AS2 family AT2G28500 72.3 4.4e-47 184.9
Bma14g00470 . 39 202 AS2 family AT2G28500 53.8 2.1e-41 166.0
Bma03g00230 . 5 119 AS2 family AT2G28500 64.3 1.1e-37 153.7
Bma08g01029 . 5 119 AS2 family AT2G28500 62.6 3.2e-37 152.1
Bma08g00958 CCT 52 211 AS2 family AT1G07900 57.7 1.5e-45 179.5
Bma08g00949 . 54 211 AS2 family AT1G07900 57.8 5.8e-45 177.6
Bma03g00327 CCT 28 186 AS2 family AT1G07900 59.1 1.9e-43 172.6
Bma14g00470 . 33 202 AS2 family AT1G07900 61.1 4.2e-43 171.4
Bma14g00879 . 8 178 AS2 family AT1G16530 50.8 3.6e-43 171.4
Bma01g01587 . 1 119 AS2 family AT1G16530 64.5 1.7e-40 162.5
Bma03g00230 . 5 128 AS2 family AT1G16530 58.8 6.0e-38 154.1
Bma08g01029 . 5 132 AS2 family AT1G16530 55.3 6.6e-37 150.6
Bma08g01069 BCT 17 177 AS2 family AT2G30340 64.6 3.1e-52 202.2
Bma03g00188 . 8 135 AS2 family AT2G30340 73.4 4.5e-51 198.4
Bma03g00208 BCT 1 152 AS2 family AT2G30340 61.5 1.0e-50 197.2
Bma03g00188 . 3 186 AS2 family AT2G40470 67.9 1.6e-61 232.6
Bma03g00208 BCT 26 175 AS2 family AT2G40470 75.2 7.4e-59 223.8
Bma08g01069 BCT 47 194 AS2 family AT2G40470 76.3 2.4e-57 218.8
Bma08g01029 . 5 123 AS2 family AT2G40470 66.9 1.1e-38 156.8
Bma14g00879 . 19 145 AS2 family AT2G40470 59.8 2.5e-38 155.6
Bma03g00230 . 5 119 AS2 family AT2G40470 67.0 9.4e-38 153.7
Bma09g00604 . 1 122 AS2 family AT2G42440 79.0 3.1e-51 198.7
Bma13g00845 . 3 122 AS2 family AT2G42440 66.4 5.5e-40 161.4
Bma05g01116 . 19 119 AS2 family AT2G42440 69.3 6.8e-38 154.5
Bma05g01128 . 23 123 AS2 family AT2G42440 69.3 6.8e-38 154.5
Bma09g00604 . 4 122 AS2 family AT3G58190 82.6 1.0e-53 206.8
Bma13g00845 . 3 122 AS2 family AT3G58190 70.5 7.4e-44 174.1
Bma05g01116 . 19 121 AS2 family AT3G58190 73.8 3.4e-41 165.2
Bma05g01128 . 23 125 AS2 family AT3G58190 73.8 3.4e-41 165.2
Bma10g00422 . 3 95 AS2 family AT3G58190 76.3 4.6e-38 154.8
Bma04g00795 . 29 116 AS2 family AT3G58190 79.5 6.7e-37 151.0
Bma09g00604 . 1 139 AS2 family AT2G31310 59.7 3.0e-41 165.2
Bma13g00845 . 4 109 AS2 family AT2G42430 85.8 7.2e-48 187.6
Bma10g00422 . 4 96 AS2 family AT2G42430 86.0 2.3e-41 166.0
Bma09g00604 . 3 109 AS2 family AT2G42430 72.9 2.3e-41 166.0
Bma05g01116 . 19 121 AS2 family AT2G42430 72.8 1.2e-39 160.2
Bma05g01128 . 23 125 AS2 family AT2G42430 72.8 1.2e-39 160.2
Bma05g01115 . 8 101 AS2 family AT2G42430 72.3 9.8e-37 150.6
Bma05g01128 . 8 215 AS2 family AT4G00220 60.1 8.8e-56 213.8
Bma05g01116 . 19 211 AS2 family AT4G00220 58.6 8.2e-54 207.2
Bma05g01115 . 12 99 AS2 family AT4G00220 81.8 3.4e-39 158.7
Bma04g00795 . 29 113 AS2 family AT4G00220 85.9 2.8e-38 155.6
Bma05g01128 . 23 215 AS2 family AT2G45420 65.7 6.5e-63 237.7
Bma05g01116 . 19 211 AS2 family AT2G45420 65.3 3.2e-62 235.3
Bma05g01115 . 12 100 AS2 family AT2G45420 84.3 9.8e-43 170.6
Bma04g00795 . 29 116 AS2 family AT2G45420 87.5 2.8e-42 169.1
Bma09g00604 . 7 109 AS2 family AT2G45420 73.8 1.4e-41 166.8
Bma13g00845 . 8 109 AS2 family AT2G45420 76.5 2.0e-40 162.9
Bma10g00422 . 8 95 AS2 family AT2G45420 83.0 3.3e-38 155.6
Bma05g01116 . 19 120 AS2 family AT3G03760 79.4 2.1e-40 162.9
Bma05g01128 . 23 124 AS2 family AT3G03760 79.4 2.1e-40 162.9
Bma13g00845 . 4 109 AS2 family AT3G03760 73.6 3.4e-38 155.6
Bma09g00604 . 2 102 AS2 family AT3G03760 73.3 5.8e-38 154.8
Bma05g01116 . 19 128 AS2 family AT4G00210 75.5 5.2e-45 177.9
Bma05g01128 . 23 132 AS2 family AT4G00210 75.5 5.2e-45 177.9
Bma05g01115 . 5 100 AS2 family AT4G00210 79.2 1.7e-40 162.9
Bma13g00845 . 3 109 AS2 family AT4G00210 67.3 2.7e-38 155.6
Bma09g00604 . 2 102 AS2 family AT4G00210 70.3 4.7e-38 154.8
Bma05g01116 . 19 127 AS2 family AT2G45410 71.6 4.5e-45 177.9
Bma05g01115 . 8 100 AS2 family AT2G45410 82.8 1.1e-43 173.3
Bma04g00795 . 29 116 AS2 family AT2G45410 77.3 4.1e-38 154.8
Bma13g00845 . 4 109 AS2 family AT2G45410 66.0 4.5e-37 151.4
Bma09g00604 . 3 102 AS2 family AT2G45410 68.0 4.5e-37 151.4
Bma03g00702 . 16 148 AS2 family AT1G06280 59.7 1.3e-37 153.3
Bma01g01122 . 1 172 AS2 family AT1G68510 63.2 5.1e-59 224.6
Bma02g00477 . 1 178 AS2 family AT1G68510 61.1 6.9e-56 214.2
Bma01g00677 . 1 130 AS2 family AT1G68510 59.2 1.2e-39 160.2
Bma15g01117 CCT,ECH 1 104 AS2 family AT1G68510 62.5 1.3e-38 156.8
Bma06g00353 CCT,ECH 1 116 AS2 family AT1G68510 57.8 1.4e-37 153.3
Bma01g01122 . 1 138 AS2 family AT1G67100 81.6 8.1e-65 243.8
Bma02g00477 . 1 159 AS2 family AT1G67100 73.3 4.0e-64 241.5
Bma06g00353 CCT,ECH 1 116 AS2 family AT1G67100 62.9 1.6e-41 166.4
Bma15g01117 CCT,ECH 1 122 AS2 family AT1G67100 58.2 1.8e-40 162.9
Bma01g00677 . 1 104 AS2 family AT1G67100 65.4 2.6e-39 159.1
Bma01g01122 . 1 289 AS2 family AT3G02550 57.9 5.7e-75 277.7
Bma02g00477 . 1 288 AS2 family AT3G02550 55.8 3.7e-74 275.0
Bma15g01117 CCT,ECH 1 136 AS2 family AT3G02550 52.4 1.3e-39 160.2
Bma06g00353 CCT,ECH 1 134 AS2 family AT3G02550 56.0 1.5e-38 156.8
Bma01g00677 . 1 104 AS2 family AT3G02550 63.5 8.1e-37 151.0
Bma15g01117 CCT,ECH 1 229 AS2 family AT5G67420 59.4 1.9e-67 252.7
Bma06g00353 CCT,ECH 1 241 AS2 family AT5G67420 54.1 2.4e-62 235.7
Bma01g00677 . 1 138 AS2 family AT5G67420 61.1 9.0e-46 180.6
Bma01g01122 . 3 122 AS2 family AT5G67420 65.0 1.3e-44 176.8
Bma02g00477 . 3 122 AS2 family AT5G67420 64.2 6.5e-44 174.5
Bma01g00676 CCT,ECH 1 146 AS2 family AT5G67420 57.2 4.2e-43 171.8
Bma01g02251 CCT,ECH 1 114 AS2 family AT5G67420 61.4 3.0e-41 165.6
Bma06g00353 CCT,ECH 1 240 AS2 family AT3G49940 56.9 1.2e-66 250.0
Bma15g01117 CCT,ECH 1 228 AS2 family AT3G49940 57.5 1.9e-64 242.7
Bma01g00677 . 1 141 AS2 family AT3G49940 60.3 4.4e-45 178.3
Bma02g00477 . 3 112 AS2 family AT3G49940 69.1 5.4e-43 171.4
Bma01g01122 . 3 112 AS2 family AT3G49940 68.2 7.1e-43 171.0
Bma01g00676 CCT,ECH 1 149 AS2 family AT3G49940 57.1 9.2e-43 170.6
Bma01g02251 CCT,ECH 1 116 AS2 family AT3G49940 62.9 1.9e-40 162.9
Bma15g01117 CCT,ECH 1 229 AS2 family AT4G37540 55.2 5.4e-64 241.1
Bma06g00353 CCT,ECH 1 241 AS2 family AT4G37540 52.9 6.6e-62 234.2
Bma01g00677 . 1 105 AS2 family AT4G37540 72.4 4.5e-42 168.3
Bma01g02251 CCT,ECH 1 114 AS2 family AT4G37540 64.9 5.8e-42 167.9
Bma02g00477 . 3 113 AS2 family AT4G37540 66.7 1.3e-41 166.8
Bma01g01122 . 3 113 AS2 family AT4G37540 65.8 1.7e-41 166.4
Bma01g00676 CCT,ECH 1 121 AS2 family AT4G37540 62.8 4.6e-39 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004254 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57703 PF03195 LOB 4.40E-35 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00088 Bma_Chr08 FPKM 1.385249 1.181006 1.095265 1.144504 1.995301 1.995167 2.050757 0.665145 0.88939 1.085335