Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00092 AGATGGGCTTCTGCCCGAAGAAGTGGGATGACTGTTTTGGGAAAAGTTGCTGTTCCTAAGCCTATAAATTTACCCAGTCAAAGGTTAGAGAACCATGGTCTGGACCCAAATGTAGAAATTGTGCCCAAGGGTACCCTCAGCTGGGGCAGTAGGTCATCATCTTCAACATCAAACCCCTGTTCCTTATCTCAATCCCCAAACACTGATGGTGGTACTAGTTCCCCGAGTCATCTCAGTGGCCGACCATCATCTGGTGGAAGTGGCACTAGACCATCAACAGCTGGTAGTGACAGAGCTCATGAATCTATTGCTAGTGCATGGGGACCCAATTCTCGGCCATCATCAGCCTCAGGTGCAGTAAGGTCAAATCAGACATCACTTGCATTGTTATGTCCTCGCAGTGCAGAAACAAGACCTAGTAGCTCTCACTTGTCACGCTTCGCAGAGGCTTCATCTGAAAATCCAGTAGCTTGGAGCTCTGCTGCAACTGCAGAGAAGCTGGGCGTGGGACAATACAAGGATGAAGGTTTTGCTTTGACATCTGGGGATTTTCCTATGCTTGGTTCAGAGAAAGGCAATAGTGGAAAGAATTCTGAATCACAAGTTTTGTTTTCATTTTTTTTTCTTTTTTTAATTTCAGATGATGTTTCCCACAATGAAAATGTGAAGATTGCGGCCGTGCATTCATGGAGTAGAGATACTCCATATGGTGAAGATGGAGCTAGGTACAGTACAGAGAAATGGCAGGGACATCCCCGTCCTTATACTGGCGCTAATATGGTTTCTCCCCCTTATGATACTCGGAATTGCATACCAGCAAATAATCCTCAAGGTGGAGTCTGGTATAGAGGTCCCAGAGGTGGTCCTCCTTATGGAACCCCTGCGTCACCTGCTGGCTTTCCTATGCAGCCATTTCCCTATTATCACCCCCATATTTCAGCTGGTCTTCTAGCCAACCCACAACCAGTTCATCCCACTGGAGTCGGACCTAGGGGACACCATCCGCAAACTGATGTTTACAGACATCCTGTGCCTGATGCATTTGTTCGTCCAGCAATGCCAATTAGACCTGGATTTTTCCCCGGTCCTGTTCCATATGAGGGATATTATTGTCCTCCAAGGGGCTATGTTAATGAGCGGGATGCTGCTTTTCCAGGAATGGTAGGTGCTTCCTCCTTTTATGATAGATACCCTAGCCAAAATGCTCCTGATCCTAATTCCCAGCGCAGATTCAATGAATGTGGTTCTACAGGCCAAGGATTGGTTTCTGAAAAAGGAGATTCTAGTCATTTACGTGATTCACAAAGATCATTAAAGGTTCTTACAAATCAGCACAATTGCTGGGATGACGAAATTGTAGGGCAGAATGGGGAAAGCTCTTTTGAAATCAATCAACCACCCCTTGCAATCATTGACCAACCAAGAATATCTTCACATGCTGAGACGGTTGACAAAGCAAGAATATCTTTGCAGGAGAAATTGGGGTTGGATAATGGGAATGACGGAAAGCCTGATTTGAGGAGAAGAACATTGGCTATAGAAGCTTCTTTTAACACTTCTGGTCAACATGGAACTTTTGCTTCTTACCCTATCAAACTGTCATCTTCTCACGGGAATGTGGAAAACTCAGAGGCTGTTGGTGATTTATATCTTAACAAATTGGAACTTCGAGCCATTGGTTACTCAGAAGTTCATCAGTTTTTGCCAGCTGCTGCAAAAGATTCTAGTTCAATACAAAAGATAGAGGAACTAAATGTTAAAGCTCGGCGTGCCAAAATGAGGGAGCTAGCAAAGCAACGCAGCAAACAACTGCAGGAGGAGGAGGAGGAGCGAACAAGAAAGCAGAAGGCTAAGGCTTGGGCAAAACTAGAAGAGTTGAACAGGCGTACACAAGCTGAGGCAGAGCCAACTCAGAATTATGACAATACTCCTTGCGATGTTATCAAGGATAAACAAGAAGAATCTATAACTTTTGGTGCAATAAGATTCGCTCCTTCATACTTGGCAGTCAATGCATTTTATGGGGCCGAAGTTTCAAAGGAACTGACGCCTTTGTGGGTGATGGGGCCGATCATCGTGGCTCTTTACATCAAAATGTTTCACTGGTTATGTGCTCTCTACATCTTCACCTTCAAGCAGGCTACAAAAATAGTTAAGAATTTACCCACTTACTACAAGATAGCTCACATCTACATCGTAAATGGGAAGTTAAAAGAAGAGGCACGGGCTCATTTCTGGCAACCGATAATGAACCTCAGGAACCTCGATTACAAAGATCTATGTAGAGGAAAGCTCAAAGTATTGGTAGATTGGCTTGTGGAGAAGTACTTGGATTTTGTTGAATCTATTTGGCCATTTTATTGCAGAACAATCAGAATGGGGAAGTTAAGCTCCTTCTTTTCTTTTACTATCCAGTTGAGCTTTTCAAGAGGATTAAATGAGAGCAAGCATGATTCTCAGCCGCTAAGATATGCCAAAGGTATCGAGTCATTCCAGTCCATCAATTGGTTGCTCAAATCTAAAAGGGGTTTCTGCAGTAGAAACACCACTCTTTTTGCTACTTCAGAAGAACAGTCGCCATTAAATGAGCTTATTTCTTCAGTAGCTTCGGAACTAGAAGATCGGCTTCCTATCAGCGAAGACATCCCTTCCAGTACTGATATTGATCTCCAATTTGAGGGATCTGGGGGGAGACCAGGTGTAATCTCATTTTACAATCGTCCTTACGGAGAAGGAAATGGAACTCTTATGCCTAGACCTCGAAGCAATCAAAACAGTTTATTATGGTTTATTGGCCCAGCTGTCCTTGTAGCCTCTTTCATTTTTCCCTCACTTTATTTGAGAAGAATACTGTCTACTATCTTTGAAGATTCCTTGTTAACAGATTTCCTCATATTGTTCTTCACAGAAGCACTTTTCTACTGTGGGGTGGCAGTATTTCTTCTTCTAATAGACCTTTTAACAAGGCCCCCTGAAACTAACGCAGTGGCAAATACTTACAGAACCTTTACCCCTGAGTTGGGACAGAGAATTTCTTCTGTCGCCACCCTAGTTCTTAGCCTTATTATACCAATGGTCACCATGGGTTTGGTGTGGCCATGGACTGGCCCTGCCGCTTCTGCAACTCTCGCTCCTTACCTTGTCGGTATTGTCGTCCAATTTGCATTTGAACAATATGTGAGACATAAGAAGTCCCCATCATGGCCTGTGATTCCAATTATTTTCCAGGTTTATAGATTACATCAACTGAATAGAGCAGCACAATTAGTGACTGCCCTATCATTCACTGTGAAAGGAGCTGAAATGACCTCACACAATTTGGCAATAAACAGCTCCTTGGGGACTCTTTTGAACGTCCTTCAGTGTCTTGGGGTGATATGTATCTGGTCTCTCTCCAACTTCCTCATGAGGGTGTTTGCTTCTACTCCTACAACTGTTCAATAA 3444 43.64 RWASARRSGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGSRSSSSTSNPCSLSQSPNTDGGTSSPSHLSGRPSSGGSGTRPSTAGSDRAHESIASAWGPNSRPSSASGAVRSNQTSLALLCPRSAETRPSSSHLSRFAEASSENPVAWSSAATAEKLGVGQYKDEGFALTSGDFPMLGSEKGNSGKNSESQVLFSFFFLFLISDDVSHNENVKIAAVHSWSRDTPYGEDGARYSTEKWQGHPRPYTGANMVSPPYDTRNCIPANNPQGGVWYRGPRGGPPYGTPASPAGFPMQPFPYYHPHISAGLLANPQPVHPTGVGPRGHHPQTDVYRHPVPDAFVRPAMPIRPGFFPGPVPYEGYYCPPRGYVNERDAAFPGMVGASSFYDRYPSQNAPDPNSQRRFNECGSTGQGLVSEKGDSSHLRDSQRSLKVLTNQHNCWDDEIVGQNGESSFEINQPPLAIIDQPRISSHAETVDKARISLQEKLGLDNGNDGKPDLRRRTLAIEASFNTSGQHGTFASYPIKLSSSHGNVENSEAVGDLYLNKLELRAIGYSEVHQFLPAAAKDSSSIQKIEELNVKARRAKMRELAKQRSKQLQEEEEERTRKQKAKAWAKLEELNRRTQAEAEPTQNYDNTPCDVIKDKQEESITFGAIRFAPSYLAVNAFYGAEVSKELTPLWVMGPIIVALYIKMFHWLCALYIFTFKQATKIVKNLPTYYKIAHIYIVNGKLKEEARAHFWQPIMNLRNLDYKDLCRGKLKVLVDWLVEKYLDFVESIWPFYCRTIRMGKLSSFFSFTIQLSFSRGLNESKHDSQPLRYAKGIESFQSINWLLKSKRGFCSRNTTLFATSEEQSPLNELISSVASELEDRLPISEDIPSSTDIDLQFEGSGGRPGVISFYNRPYGEGNGTLMPRPRSNQNSLLWFIGPAVLVASFIFPSLYLRRILSTIFEDSLLTDFLILFFTEALFYCGVAVFLLLIDLLTRPPETNAVANTYRTFTPELGQRISSVATLVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYVRHKKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEMTSHNLAINSSLGTLLNVLQCLGVICIWSLSNFLMRVFASTPTTVQ 1147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1073790 1091352 + Bma027091.2 Bma08g00092 86919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00092 1147 MobiDBLite consensus disorder prediction 46 99 - -
Bma08g00092 1147 Pfam BAT2 N-terminus 5 122 IPR009738 -
Bma08g00092 1147 MobiDBLite consensus disorder prediction 20 123 - -
Bma08g00092 1147 PANTHER PROTEIN MODIFIER OF SNC1 1 1 589 - -
Bma08g00092 1147 PANTHER PROTEIN MODIFIER OF SNC1 1 588 655 IPR038808 -
Bma08g00092 1147 PANTHER PROTEIN MODIFIER OF SNC1 1 588 655 - -
Bma08g00092 1147 Coils Coil 590 617 - -
Bma08g00092 1147 MobiDBLite consensus disorder prediction 414 433 - -
Bma08g00092 1147 MobiDBLite consensus disorder prediction 107 123 - -
Bma08g00092 1147 PANTHER PROTEIN MODIFIER OF SNC1 1 1 589 IPR038808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00092 - - - tcc:18603968 517.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00092 Bma12g01044 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01019 Bma-Chr2:51507311 Bma08g00092 Bma-Chr8:1073790 3.93E-13 transposed
Bma12g01044 Bma-Chr12:42490790 Bma08g00092 Bma-Chr8:1073790 2.31E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g780 . . . . . . . Bma12g01044 Cmo13g00909 Cmo18g00138 . . . . . Cpe20g00251 . Bhi02g00474 . . . Hepe09g0212 . . Cla06g01672 . Cec06g1910 Cco06g1915 . . . Cone2ag0918 Cone16ag0089 . . Lsi02g00387 Csa01g00866 Chy12g01256 Cme12g01680 . . . . Bpe07g00847 . . Bma08g00092 . . . Cma13g00878 Cma18g00180 . Car18g00171 Cpe09g01015 . Bhi08g01637 . . . . . . Cla01g01312 Cam01g1417 Cec01g1450 Cco01g1473 Clacu01g1377 Cmu01g1287 Cre01g1254 . . . Cme02g01987
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009518 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 0 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00092 Bma_Chr08 FPKM 50.826588 54.117393 54.421482 51.257126 79.048256 91.617798 76.631317 43.269424 42.131153 39.965378