Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00095 ATGGATGATCTCTACGCAATCCATTCACATGATGATTACTCCGTTCAGTCTCGTATTGCACCGCCGGAGAACATTCTATTTCCTGTCAATCATCAACTTTCTTACTCGGATTATTTGGATCTTCCGGATTTTGGGTCGCCGCACTTGTTGCCTTCGGCGGAGTCAGACGCTGGTTCTGTTGCGGCGGAGATACAAAGAGCAGCTCCCGTTGAAGAGCAGATGATCACCGATGAAGTTAGAACGAAAATTGCTTCCCATCCTCTTTACCCTAAGCTTCTCGACGCTTATATCGATTGCCAGAAGGTGGGTGCGCCGCCGGAGATAGCGTACCTGCTGGACGAAATCCGACTAGGAACCACCGCCATGTCAAGTTGTTACGGTGATGATCCAGAACTGGACGAGTTCATGGACAAGTATTGCAGTGTACTGGTTAAGTATAAATCAGATCTCTCCCGGCCTTTTGAGGAAGCATCCTCTTTTCTGAACAAAATTGAAACGCAGCTCAATACCCTTTGCAATGGCGCCTCCAGAAGCTACGTTACTGATGAAGTTGCCAATTCTTCGGATGAAGATTTAAGCACAGGAGAGACGGAGTTGGAGTGTCCTCCGACGAACGAAGATCGTGAGCTTAAGGATACACTTTTACGCAAATACAGTGGTTATATCACTACCCTAAAGCAGGAGTTTTCGAAGAAGAAAAAGAAAGGAAAACTACCAAAGGAAGCTAGGCAAAACTTGCTGGATTGGTGGAATGTCCATTACAAATGGCCTTACCCCACGGAGGCTGACAAAGTTTTGTTGGCGGAATCGACGGGTTTGGACCAGAAACAGATAAACAACTGGTTTATAAACCAAAGAAAACGCCATTGGAGACCATCGGAAAACATGCAGTTTGCAGTTATGGACAGTCTATATGGACCTTTTTTGATGAAGGGATGA 939 45.9 MDDLYAIHSHDDYSVQSRIAPPENILFPVNHQLSYSDYLDLPDFGSPHLLPSAESDAGSVAAEIQRAAPVEEQMITDEVRTKIASHPLYPKLLDAYIDCQKVGAPPEIAYLLDEIRLGTTAMSSCYGDDPELDEFMDKYCSVLVKYKSDLSRPFEEASSFLNKIETQLNTLCNGASRSYVTDEVANSSDEDLSTGETELECPPTNEDRELKDTLLRKYSGYITTLKQEFSKKKKKGKLPKEARQNLLDWWNVHYKWPYPTEADKVLLAESTGLDQKQINNWFINQRKRHWRPSENMQFAVMDSLYGPFLMKG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1177722 1186482 - Bma027095.1 Bma08g00095 86922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00095 312 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Bma08g00095 312 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Bma08g00095 312 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Bma08g00095 312 Gene3D - 226 300 - -
Bma08g00095 312 CDD homeodomain 241 293 IPR001356 GO:0003677
Bma08g00095 312 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Bma08g00095 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 311 - -
Bma08g00095 312 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Bma08g00095 312 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Bma08g00095 312 SMART ELK_2 209 230 IPR005539 GO:0003677
Bma08g00095 312 SMART ELK_2 131 151 IPR005539 GO:0003677
Bma08g00095 312 Pfam KNOX2 domain 126 172 IPR005541 GO:0003677|GO:0005634
Bma08g00095 312 Pfam KNOX1 domain 79 116 IPR005540 GO:0003677|GO:0005634
Bma08g00095 312 SMART HOX_1 231 296 IPR001356 GO:0003677
Bma08g00095 312 Pfam ELK domain 209 230 IPR005539 GO:0003677
Bma08g00095 312 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 39 311 - -
Bma08g00095 312 MobiDBLite consensus disorder prediction 183 203 - -
Bma08g00095 312 SUPERFAMILY Homeodomain-like 230 305 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00609 Bma-Chr6:32446915 Bma08g00095 Bma-Chr8:1177722 1.79E-112 dispersed
Bma07g00020 Bma-Chr7:1185128 Bma08g00095 Bma-Chr8:1177722 1.17E-57 dispersed
Bma07g01627 Bma-Chr7:51860220 Bma08g00095 Bma-Chr8:1177722 3.80E-25 dispersed
Bma08g00095 Bma-Chr8:1177722 Bma14g01797 Bma-Chr14:38552455 1.13E-100 dispersed
Bma12g01284 Bma-Chr12:45825046 Bma08g00095 Bma-Chr8:1177722 4.53E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57704 PF03791 KNOX2 8.80E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00095 - - vvi:100243290 419.468