Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00098 ATGGCTGCTTCTTCCAGAGAAGCCGGGGTAGAAGCCGTAAACTTCCTCAAGTCGACAGACCCGCCGGTGTGGTTAGCACCTGAGTCCTCTCTATCACACGCTGCTCGCACTGCCTCCCAGCACATTTTCTCTTCTCTCAGACCTTATGCTCCCAAATCCCCGTTCGATCACCTTTTGGTTGATGGATTCGATGCTGAGCAGATATGGCAACAAATCGATATCCAATCGCAGCCTATATTGTCGACTATCCGCCGAGATTTGAAGCGTTTCGAGAAGAACCCAGAAGAAATTTCGAATCTCAAGTTGGCTTTAGAGGTCGAGAAAAAGAGTTTGGAAGATAAGTACGAGAGTTTGGATGATGACAACGATGGTTTTGATGAAAACATGGAAGAGCTTGATGAGGAAGATGAGGAGGAGGAGGAGGATAAAGAGGAAGACAGCCACGATAAAGGAGAGGAAGACGACGAAAACAGCAATGAGAAACACATAGATAGAGAAGGTGGCGATAAAATTGAAGATGGATTCTTGAAAATTAAAGAATTGGAGGAGTTTTTGGAGGAGGACGAGGCAAGGGAATATGGACTAGAGAGTAATAACTCAAAGGAGAAGGAGAAGCAAAAGCAGAAGAAAAAGGAAAAAGGTACTAAGTTAAAGAAGAACAAAGAGTTTGGAGATTTTGGGATTGGTGATAATGAAGATGAAGACCTTGATGGACTGGGAAATGCAAGGTACAAAGACTTTTTTGGTGCTAAAAAGAAAGAGCCCATAAGAAAACAATCAAAATTAACTGATGAGTCAGAAGATTCAGATGATGAAGAAGATGATGGAGACGAAGACTTGGCTACAGGCGACGAAGAAGAAGATGATGGAGAAATTGCGACTCAGAAGCCGGAAAATCTTTCTACGCATGAAAAGCAGCTTAAGAAGCTGCAATCTGAGATACAGCAGATGGAAAATGCAAACTTGGAGCCAAAAACTTGGACCATGCAAGGAGAGGTATCTGCTGCAAAAAGGCCAATGAACAGTGCCCTTGAAGTTGATCTAGATTTTGAGCACAATGTCAGACCAGTCCCTGTTATAACGGAGGAAGTTACAGCATCTCTTGAAGAGATAATCCGTAAAAGGATTATCGAGGGGCATTTCGATGACGTTCAAAAAGCACCTAGACTACCTCATGAAGCTTCAAAATTGGTCAAAGAGTTGGATGAAAATAAAAGCAAGAAGGGTTTGGGTGAAATTTACGAGGAAGAGTTTGTGCAGAAGACAAATTTAAACTCTGCCCCATTGTCAGTCTCTGATGGAATGAAGCAAGAGGCAAGCATGCTGTTCAAAAAGCTGTGTGTAAAGTTGGATGCCCTTTCACATTTTTACTTCACCCCGAAACCTGTCATTGAGGACATGTATGTACCAGCAAATATCCCTGCCTTGGCAATGGAAGAGATTGCTCCGACCGCAGTTTCAGATGCAGCCATGCTAGCTCCTGAGGAAGTTTTTTCTGGAAAAGGTGATTTCAAAGAAGAAGCAGAACTTGATCGGTCAGAGAGGAAGAAGAGGAGAGCTAACAAGAAAAGGAGACACAGAGGTAAGCACGGGAAAACTAGTTGTACTTATTAG 1614 43.0 MAASSREAGVEAVNFLKSTDPPVWLAPESSLSHAARTASQHIFSSLRPYAPKSPFDHLLVDGFDAEQIWQQIDIQSQPILSTIRRDLKRFEKNPEEISNLKLALEVEKKSLEDKYESLDDDNDGFDENMEELDEEDEEEEEDKEEDSHDKGEEDDENSNEKHIDREGGDKIEDGFLKIKELEEFLEEDEAREYGLESNNSKEKEKQKQKKKEKGTKLKKNKEFGDFGIGDNEDEDLDGLGNARYKDFFGAKKKEPIRKQSKLTDESEDSDDEEDDGDEDLATGDEEEDDGEIATQKPENLSTHEKQLKKLQSEIQQMENANLEPKTWTMQGEVSAAKRPMNSALEVDLDFEHNVRPVPVITEEVTASLEEIIRKRIIEGHFDDVQKAPRLPHEASKLVKELDENKSKKGLGEIYEEEFVQKTNLNSAPLSVSDGMKQEASMLFKKLCVKLDALSHFYFTPKPVIEDMYVPANIPALAMEEIAPTAVSDAAMLAPEEVFSGKGDFKEEAELDRSERKKRRANKKRRHRGKHGKTSCTY 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1198705 1201933 - Bma027098.1 Bma08g00098 86925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00098 537 MobiDBLite consensus disorder prediction 517 537 - -
Bma08g00098 537 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 3 531 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Bma08g00098 537 MobiDBLite consensus disorder prediction 117 153 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 112 172 - -
Bma08g00098 537 Pfam Mpp10 protein 50 531 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Bma08g00098 537 Coils Coil 300 323 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 503 537 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 266 292 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 154 172 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 236 265 - -
Bma08g00098 537 Coils Coil 101 149 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 186 307 - -
Bma08g00098 537 MobiDBLite consensus disorder prediction 191 209 - -
Bma08g00098 537 PIRSF snoRNP_Mpp10 7 536 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00098 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10 - mnt:21386466 554.673
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g767 . . . Bda15g00553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0146 . . . . . . . . . . . . Bma08g00098 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010218 1 5 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00098 Bma_Chr08 FPKM 4.581141 3.907156 7.617275 5.314589 0.0 0.0 0.191354 6.553401 5.735917 6.031868