Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00104 ATGGAGAGGGATTTTTTGGGATTGAGCTCGAAGAATGTCCTGGAAGAGGCTTTGGATCACTCGAAGAATGAAGCATCATTGAGGGGTTCAAGTATACAGTGGCCTTTCTCTAACAAGGTTGCTGTCGTTCCTCATTTGCTATCTTTCAAGGCCGCTGAAGATGATAGAGTGCGAAAAACTGTAGTTGATCCGCTTACTTCTAATGGATTCATGGCTTGGCCAGCTTCAAATTCTTTCTATTCTTTCCAGAAGCCATTTTATGGAGCATTTCAGGAAAATGGAATTATTGATTCCAAGGCAGGTAACCAATGTGCAATGACTGTTTTTCCTCTTGAGAAACTTGAAGCTCATTCAACTGATCGACCAAACATTCATTCCCAGTTAATTTCCAACATCAGACAACAGCCTCAAGGAGTTTCATTTGCAGGCCCATTTACTGGTCATCCTCTCCCTTCTTCGAGTTTGAAAACCATTTTCAGGAATCCTTCCAAATCCTCTGTTTCACATCAGTTAACAATCTTTTATGGTGGTTCTGTTAATGTTTATGATGACATATCGTCTGAATCGGCTCAGGCTGTCATGCTATTGGCTGCCAATGGATCTACTAAATCTGAAAACAACGCATCTTTCACTCCTCAAATGCAAGTCCAATCTCAGTGCCATACATCGGGTCGTCTTGATTTGCTTCATCCTAACTTTTGTCAGGATGTAAAAGTAGGAGCCTCATGTTGCGCCAGTGGGTTGACAACTATAAAACCTTCGGGGACATTGGGATCTCTTAACCCTTCTTTAGAGGCCATTAAACCTGGCTCTACTGTTGGATCTTCTGCCCCATGTGGATCATCAGCTGTGCCACAGGCACGAAAAACATCCTTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGAAACTGAACGCATCTCCGTATCATTTCCCGGAATCTGAGTGTTCGAGTTACATTGTCGACCGCTCTGCTACCGGTCCTCTTCCTGCTCTCATTTAG 1002 43.51 MERDFLGLSSKNVLEEALDHSKNEASLRGSSIQWPFSNKVAVVPHLLSFKAAEDDRVRKTVVDPLTSNGFMAWPASNSFYSFQKPFYGAFQENGIIDSKAGNQCAMTVFPLEKLEAHSTDRPNIHSQLISNIRQQPQGVSFAGPFTGHPLPSSSLKTIFRNPSKSSVSHQLTIFYGGSVNVYDDISSESAQAVMLLAANGSTKSENNASFTPQMQVQSQCHTSGRLDLLHPNFCQDVKVGASCCASGLTTIKPSGTLGSLNPSLEAIKPGSTVGSSAPCGSSAVPQARKTSLARFLEKRKERKLNASPYHFPESECSSYIVDRSATGPLPALI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1233037 1236014 - Bma027104.1 Bma08g00104 86931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00104 333 Pfam Jas motif 285 309 IPR018467 -
Bma08g00104 333 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 267 318 IPR040390 -
Bma08g00104 333 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 32 206 IPR040390 -
Bma08g00104 333 SMART tify_2 164 199 IPR010399 -
Bma08g00104 333 Pfam tify domain 168 198 IPR010399 -
Bma08g00104 333 ProSiteProfiles Tify domain profile. 164 199 IPR010399 -
Bma08g00104 333 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 267 318 - -
Bma08g00104 333 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 32 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00104 K13464 JAZ; jasmonate ZIM domain-containing protein - cpap:110825441 209.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00104 Bma-Chr8:1233037 Bma15g00047 Bma-Chr15:648856 1.45E-10 dispersed
Bma08g00104 Bma-Chr8:1233037 Bma01g00267 Bma-Chr1:2227764 3.78E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g188 . . . . . . . . Cmo13g01016 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0772 . . . . . . . . . . . . . . Bma08g00104 . . . Cma13g00982 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001064 2 5 0 2 2 2 4 2 2 1 2 2 4 2 2 4 2 5 4 2 2 2 2 2 2 2 2 11 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57705 PF06200 tify 2.00E-14 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00104 Bma_Chr08 FPKM 0.289562 0.631615 0.381719 0.902562 0.22381 0.0 0.0 0.118119 0.072856 0.0