Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00105 ATGTGGTCTGGACGCATTTCATACTGTTGTGGGCGGTGTATTCTTCCTTCTTCACTCCGCTCGAGTTTGGCTTCTTCAGAGGACTCCCTGAGAACCTCTTCCTTCTCGATAGCGCCGGTCAGATTGTCTTTTTCGTCGACTATTTTCGTCCGCTTCTTCGTTGCATATCCAGACTTCCTCGCACACCGCATCGTCTCCGATCGGAAACTCATCGCTCTCAGGTATTTGAAGTCTCGCTTTTTGGTCGATTTACTAGGTTGTATGCCCTGGGATGCTATCTACAAGGCATCTCGTAAGCAAGAGCCAGTCCGTTACCTGCTCTGGATTCGACTAAGTCGAGCTTGCAGAGTGACAGAGTTTTTTGAGAAGTTAGAAAAAGATATTCGGATAAACTATCTTGGAACTAGAATTGTGAAACTTTTTGTTGTTGAGCTTTACTGCACGCATACTGCAGCCTGCATTTTCTACTACCTGGCCACAACTCTGCCTCCCTCCAAAGAAGGGTACACATGGATAGGAAGTCTAAAGATGGGTGACTACAGCTATTCTCACTTTAGAGAAATTGATCTTTGGAAACGTTACGTCACATCATTATACTTTGCTGTTGTCACCATGGCAACTGTTGGTTATGGAGAAATACATGCAGTCAATGTCAGGGAAATGATATTCATCATGATATACGTGTCATTTGATATGATTCTTGGTGCTTATCTCCTTGGTAACATGGCAGCCTTAATAGTGAAAGGATCAAAAACAGAAAAGTTTAGGGATCAAGTGACAGACCTTATCAAATACATGAATAGAAACAAACTCGATAAACATATAAGTAAAGAAATTAAATCCCATCTCCGATTGCAGTATGATCGTAGCTATGCTAAGTCTGACGTACTTCAGGATATTCCATCCTCTATTCGCTGCAAGATTTCACAGAACTTATATGAGCCATTCATCAAAAAGGTTCCCCTATTCAGAGGTTGTTCTATGGGATTTATAAAGCAAATTGCAAGCAGAGTTCATGAAGAATTTTTCCTCCCTGGAGAAGTGATTCTAGAGCAGGGAAATGTAATTGATCAATTGTATGTTGTGTGCCATGGCGAATTGGAGGAAGTTGATAAGGGTGAAGATGATGAATCAGAAGAGCTGGTCAGGCATCTGGAAACATACAGCTCGTTTGGTGAGATTTCCTTCCTTTGCAACAGTCCCCAGCCATATACTGTTCTTGTTCGTGAACTATGCAGGGTTTTACGGCTTGATAAACAATCCTTTAGAGAAATCTTGGAGATTTACTTTTTAGATGGACGGACTATTTTAAATAACCTCCTTGAGGGAAAGGATTCAAATCTTCAAAACAAGCTTCAGGGATCAGACGTAAGTATGTTAATTGGAAAACATGAATTTGAGTTAGCTATGAGGGTAAATTGTGCAGCACATGACGGAGACTTTTTCCAATTAAAACGTTTAATTCGAGCTGGGGCAGATCCTAAAAGGACTGATTATGATGGAAGATCTCCTTTGCATTTCTCTGCATCTAAAGGATACAAAGATATTGCTCGTTTTCTCATTGAACAAGGAGTGCAAGTTAATCTGTCAGATAAATTTGGGAACAGTCCCTTATTCGAAGCCGTAAAAAATGGACATGATCAAGTAGCTTCTCTACTTGTTGAAGCTGGAGCAACGCTTGGTATAGATGATACTGGTGGCTTTCTCTGCTCGACTGTAGCCAGGAGAGATCTGGATCTTTTAGTAAGGGTTTTGGCAAATGATATTGATCCAAATGCAAGAAATTACGATCACAGAACCCCACTTCACATAGCTGCGGCTGAAGGATTGTATCTCATCTCAGAAGTACTTCTAAAAGCAGGAGCAAGTGTGTTGTTAAGGGACAGATGGGGAAATACACCACTAGATGAATCACGCATTAACGGAAATAAGAATTTGATCAAGCTACTTGACGTTGCAAGAACGTCTCAACTGTCCACTTTCTCCGGTTCTTATAAGAATCTTCAAGATGAAACGATCAGAAAGAAGTGCACTGTGTTTGGCTTCCACCCATTTAAACCCAAGGAAGAGAGAGAAGACGGAGTGGTCCTATGGGTTGCTCCAACCATTGAAGAGCTCATCAAGGCAGCCATGGAGGAGCTCAAATGTCCAAATGCCACCTCCATTCTGTCAGAAAATGGAGGTAAAATTCTTGACCCTGCCATGATTGCCAACAATGATAAGCTTTTCTTAATTTAG 2238 41.38 MWSGRISYCCGRCILPSSLRSSLASSEDSLRTSSFSIAPVRLSFSSTIFVRFFVAYPDFLAHRIVSDRKLIALRYLKSRFLVDLLGCMPWDAIYKASRKQEPVRYLLWIRLSRACRVTEFFEKLEKDIRINYLGTRIVKLFVVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLKMGDYSYSHFREIDLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFIMIYVSFDMILGAYLLGNMAALIVKGSKTEKFRDQVTDLIKYMNRNKLDKHISKEIKSHLRLQYDRSYAKSDVLQDIPSSIRCKISQNLYEPFIKKVPLFRGCSMGFIKQIASRVHEEFFLPGEVILEQGNVIDQLYVVCHGELEEVDKGEDDESEELVRHLETYSSFGEISFLCNSPQPYTVLVRELCRVLRLDKQSFREILEIYFLDGRTILNNLLEGKDSNLQNKLQGSDVSMLIGKHEFELAMRVNCAAHDGDFFQLKRLIRAGADPKRTDYDGRSPLHFSASKGYKDIARFLIEQGVQVNLSDKFGNSPLFEAVKNGHDQVASLLVEAGATLGIDDTGGFLCSTVARRDLDLLVRVLANDIDPNARNYDHRTPLHIAAAEGLYLISEVLLKAGASVLLRDRWGNTPLDESRINGNKNLIKLLDVARTSQLSTFSGSYKNLQDETIRKKCTVFGFHPFKPKEEREDGVVLWVAPTIEELIKAAMEELKCPNATSILSENGGKILDPAMIANNDKLFLI 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1237938 1247570 - Bma027105.1 Bma08g00105 86932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00105 745 Pfam KHA, dimerisation domain of potassium ion channel 675 744 IPR021789 -
Bma08g00105 745 Pfam Cyclic nucleotide-binding domain 342 427 IPR000595 -
Bma08g00105 745 ProSiteProfiles Ankyrin repeat region circular profile. 500 532 - -
Bma08g00105 745 Gene3D - 467 566 IPR036770 -
Bma08g00105 745 Pfam Ankyrin repeats (3 copies) 475 562 IPR002110 GO:0005515
Bma08g00105 745 Pfam Ion transport protein 44 247 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma08g00105 745 Pfam Ankyrin repeat 598 628 IPR002110 GO:0005515
Bma08g00105 745 Gene3D - 567 675 IPR036770 -
Bma08g00105 745 ProSiteProfiles Ankyrin repeat region circular profile. 533 564 - -
Bma08g00105 745 SUPERFAMILY cAMP-binding domain-like 250 440 IPR018490 -
Bma08g00105 745 ProSiteProfiles Ankyrin repeat region circular profile. 597 629 - -
Bma08g00105 745 ProSiteProfiles cAMP/cGMP binding motif profile. 322 426 IPR000595 -
Bma08g00105 745 ProSiteProfiles KHA domain profile. 676 745 IPR021789 -
Bma08g00105 745 SMART ANK_2a 533 562 IPR002110 GO:0005515
Bma08g00105 745 SMART ANK_2a 597 626 IPR002110 GO:0005515
Bma08g00105 745 SMART ANK_2a 500 529 IPR002110 GO:0005515
Bma08g00105 745 PANTHER POTASSIUM CHANNEL SKOR-LIKE 42 745 - -
Bma08g00105 745 ProSiteProfiles Ankyrin repeat profile. 500 532 IPR002110 GO:0005515
Bma08g00105 745 ProSiteProfiles Ankyrin repeat profile. 533 565 IPR002110 GO:0005515
Bma08g00105 745 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
Bma08g00105 745 CDD CAP_ED 322 437 IPR000595 -
Bma08g00105 745 PRINTS EAG/ELK/ERG potassium channel family signature 238 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma08g00105 745 PRINTS EAG/ELK/ERG potassium channel family signature 194 211 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma08g00105 745 PRINTS EAG/ELK/ERG potassium channel family signature 146 156 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma08g00105 745 SMART cnmp_10 322 441 IPR000595 -
Bma08g00105 745 SUPERFAMILY Ankyrin repeat 473 650 IPR036770 -
Bma08g00105 745 SUPERFAMILY Voltage-gated potassium channels 44 247 - -
Bma08g00105 745 PANTHER POTASSIUM CHANNEL AKT1 42 745 IPR045319 GO:0005249|GO:0006813
Bma08g00105 745 Gene3D - 27 248 - -
Bma08g00105 745 Gene3D Jelly Rolls 292 458 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00554 Bma-Chr2:11324190 Bma08g00105 Bma-Chr8:1237938 0 dispersed
Bma07g00455 Bma-Chr7:5495345 Bma08g00105 Bma-Chr8:1237938 6.82E-08 dispersed
Bma08g00105 Bma-Chr8:1237938 Bma11g00485 Bma-Chr11:6033947 2.29E-80 dispersed
Bma08g00105 Bma-Chr8:1237938 Bma01g01158 Bma-Chr1:12674262 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00105 K21867 - jre:108993203 1046.19