Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00106 ATGGGTCTGTTTTTATCCAGAAACATTGCGAATTTCGTCGTTTCTTCTGTTCTTTTGTCCAAGAAAATTCCTGGTAATCTCGTCCCCATGCGGATAGAAAATATGGTCTCTCTGATTTCGGCTCGAACGGGGAGACATCGACAGCGGTACAACAAAGGATGCCGTTTAGTTGTAGGATGTATTCCATACAGATATAAGGACTCTAAGCAATCATTCTCCATTGATAATATGGAGGTGCTTGTTATTAGTTCTCAAAAGGGTGAAGCAATGTTATTCCCAAAAGGAGGGTGGGAGAACGACGAGTCTATGGAAGCTGCAGCTTCAAGAGAGACATTGGAAGAAGCTGGTGTAATTGGGAAAATCCAAAGTAGATTGGGGAAGTGGCAATACAAGAGCAAGAGCCACAGCAAAATGCACGAAGGCTACATGTTTTCTTTGCTTGTCAAAGAGCAGTTGAACCATTGGCCTGAGAAAAACTTCAGAAAACGAGAATGGATGAGTGTAGAAAAGGCTAAAGAAGCTTGTCCTCATTCATGGATGAAAGAAGCTTTGGATGTATTAGTTAGTCAGCAAATGGAGCAAAAACAGAATGAATGTTTCTGTATATAA 609 41.05 MGLFLSRNIANFVVSSVLLSKKIPGNLVPMRIENMVSLISARTGRHRQRYNKGCRLVVGCIPYRYKDSKQSFSIDNMEVLVISSQKGEAMLFPKGGWENDESMEAAASRETLEEAGVIGKIQSRLGKWQYKSKSHSKMHEGYMFSLLVKEQLNHWPEKNFRKREWMSVEKAKEACPHSWMKEALDVLVSQQMEQKQNECFCI 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1267007 1268171 + Bma027107.1 Bma08g00106 86933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00106 202 Pfam NUDIX domain 78 182 IPR000086 -
Bma08g00106 202 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 15 196 - -
Bma08g00106 202 CDD Nudix_Hydrolase_9 56 181 - -
Bma08g00106 202 PANTHER NUDIX HYDROLASE 4-LIKE 15 196 - -
Bma08g00106 202 SUPERFAMILY Nudix 44 188 IPR015797 -
Bma08g00106 202 ProSiteProfiles Nudix hydrolase domain profile. 53 188 IPR000086 -
Bma08g00106 202 ProSitePatterns Nudix box signature. 95 116 IPR020084 GO:0016787
Bma08g00106 202 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 39 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00106 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - zju:107419557 266.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00520 Bma-Chr2:10349324 Bma08g00106 Bma-Chr8:1267007 7.61E-68 dispersed
Bma06g01128 Bma-Chr6:48143137 Bma08g00106 Bma-Chr8:1267007 8.92E-62 dispersed
Bma06g01317 Bma-Chr6:50175929 Bma08g00106 Bma-Chr8:1267007 7.24E-43 dispersed
Bma08g00106 Bma-Chr8:1267007 Bma08g00871 Bma-Chr8:46891330 1.69E-50 dispersed
Bma08g00106 Bma-Chr8:1267007 Bma03g00421 Bma-Chr3:3215532 9.45E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g175 . . . Bda15g00560 Bpe12g00647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00124 Blo15g00019 . . Bpe07g01087 . . Bma08g00106 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014882 1 0 2 1 2 0 2 0 0 0 0 0 2 0 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00106 Bma_Chr08 FPKM 3.565131 5.356921 2.611389 2.18912 249.480362 267.91156 258.496368 1.674228 1.705352 2.56161