Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00110 ATGATACCCAATAGCTCTTGCCCTTCTCTCCCTTCTTGTGAACCATTTTCGTGCTTAGAAAATGGAACGAGTAACAAGAGGAAACGACGACCGGCGGGAACACCAGATCCAGATGCAGATGTAGTATCTCTTTCGCCCAAAACATTGCTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGCCGGAGACACAAAGTGCCGTGGAAACTGTTGAAGAGGGAGTCGCCGTCGGTGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGCTTGCACCACGACCCCTGCCACGCCCTCGGAGATCTCGTCGGAATAAAAAAACATTTCCGCCGAAAGCACAGCAATCACAAGCAATGGGTTTGTGAAAAATGTTCCAAAGGATATGCAGTTCAATCAGATTACAAAGCTCATCTCAAAACCTGTGGAACAAGAGGCCATTCTTGCGACTGTGGCCGAGTTTTCTCAAGGGTGGAAAGTTTCATAGAACATCAAGATGCTTGCAACTTGGGTCGACTTCGGCCAGAATTGCAAACTCCTCAGCCGGCATGCTTATCTCGGACAGCTTCGAGTCTCAGCCCGACGAGCGATACCAACTTTGCGAGTGCTCAGATTTGGCCATCAATGGCGACTCAAAAGAGAAAAGACGCCATTTTCTTCCCCAACTCAAAAGAAAACACCCCCCAAGAAAATGCCCACACTTACTATCACAATCTTGATCTTCAGCTCTCTACCACTTCATCAAATCCAACAGATATTTCTTCCGTTTCTCCGAATAAAGACGAAAAGCAATCGACTCATTTGCAGCTCTCGATTGCTTCATCTAATTTCATCAAGAAACTCGAATCGAACTCAGTGAAGGACGAGAAATCTCGGTTTGTTTCAGTTTCGAGGATTATCAAAGAAGAAGAGCAGCTTAGAATGGCCATGGCGGAAAAAGCTTGCGCCGAAGAAGCGAGAAAACAAGCGAAGAGACAGATTGAATTAGCCGAAGAAGAATTTGCAAATGCAAAGAGAGTTAGGCAGCAGGCCCAGAATGAGCTAGAAAAAGCTCAAGCTTTTAAAGAACATGCAATCAAAAAGATGAACTCCACAATTCTGCAAATCACGTGCCAAGCTTGTCAAAGAAGAATTCAGGCAAGAAAAACAGTTTTACCTTCTTCAGAAAATGAGAATTCACTGGTTTTGAGTTTTATTTCTTCAGTAATCACGACAGAAGGCGATCAAGTAGAAAAACATCATCAATTTAATCCATGA 1293 44.39 MIPNSSCPSLPSCEPFSCLENGTSNKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPSVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLGRLRPELQTPQPACLSRTASSLSPTSDTNFASAQIWPSMATQKRKDAIFFPNSKENTPQENAHTYYHNLDLQLSTTSSNPTDISSVSPNKDEKQSTHLQLSIASSNFIKKLESNSVKDEKSRFVSVSRIIKEEEQLRMAMAEKACAEEARKQAKRQIELAEEEFANAKRVRQQAQNELEKAQAFKEHAIKKMNSTILQITCQACQRRIQARKTVLPSSENENSLVLSFISSVITTEGDQVEKHHQFNP 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1337429 1339675 - Bma027112.1 Bma08g00110 86937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00110 430 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Bma08g00110 430 SUPERFAMILY beta-beta-alpha zinc fingers 52 78 IPR036236 -
Bma08g00110 430 Coils Coil 311 373 - -
Bma08g00110 430 MobiDBLite consensus disorder prediction 258 277 - -
Bma08g00110 430 Gene3D Classic Zinc Finger 32 97 - -
Bma08g00110 430 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 10 418 - -
Bma08g00110 430 SMART c2h2final6 132 159 IPR013087 -
Bma08g00110 430 SMART c2h2final6 55 77 IPR013087 -
Bma08g00110 430 SMART c2h2final6 96 126 IPR013087 -
Bma08g00110 430 MobiDBLite consensus disorder prediction 21 42 - -
Bma08g00110 430 Gene3D Classic Zinc Finger 117 191 - -
Bma08g00110 430 PANTHER OS03G0310200 PROTEIN 10 418 IPR039288 GO:0009630
Bma08g00110 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Bma08g00110 430 Pfam Zinc finger, C2H2 type 55 77 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00505 Bma-Chr1:4159786 Bma08g00110 Bma-Chr8:1337429 3.03E-162 dispersed
Bma08g00110 Bma-Chr8:1337429 Bma12g01274 Bma-Chr12:45750425 0 dispersed
Bma12g01082 Bma-Chr12:43118488 Bma08g00110 Bma-Chr8:1337429 4.05E-18 dispersed
Bma08g00110 Bma-Chr8:1337429 Bma08g00129 Bma-Chr8:1683055 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57707 PF00096 zf-C2H2 0.004 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00110 K25871 - qsu:112038406 595.119