Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00117 ATGGTGGTATACAACATTATCGTTGATCCCGAGGAATACAATTTTTTCAACGAGTTTGTGCAGTTTCATAATGCTTTCTATGGGGACGCAAAAGGCTGGGCAAGGAAGTTTTGGTCTTATATTCCAAGAGTCATGAATCCTCATACGAAAATTATCCAAAAGTGGAACAAGTTTTTTGTTATTTCTTGTTTGGCGGCGATCTTTTTGGACCCGTTATTTTTCTTCCTACTCTCTGTCCAACAGGAGAATAAGTGCATAGTTATAGATTGGCCCATGACTACAGCTCTGGTGGTTTTCCGAAGCATGACTGATTTCATTTACGTTCTCCACATCCTTCTTCAGTTCAGGTTAGCCTATGTGGCTCCGGAGTCTAGAGTAGTTGGTGCAGGAGAGTTAGTGGACCATCCCAAGAAAATTGCTCTGAATTACCTTCGTGGTTTCTTTGTTGTTGACTTATTTGCAGCATTGCCTCTGCCTCAGATCATAATTTTGTTGATACTACCAAGATCCCTTGGAACATCTGGTGCAAACTACGCAAAAAATCTTTTACGTGCAGCAGTTCTCGTGCAATATATACCCAGATTGTTTAGATTTTTGCCACTTCTGGTTGGTCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCGTGGGCCAATTTTGTTCTCAATCTTTTCACTTTTATGTTGTCTGGCCACGTTGTCGGCTCTTTCTGGTACCTCTTCGGATTGCAGAGGGTCAACCAATGTTTACGAAATGCCTGCCAAAACTCTGGAATTCAATCGTGCATGACATTTATAGATTGTGGACATGGTGATAATCTCAACAGATTTGATTCTTATCCGACATGGAAGAGCTGGAGAGACAATGAGAATGCTAGCTCTTGCTTTACGCCAGATGGATTTTCTTACGGAATCTACGTTCAAGCTGTCAGTCTTACCTCAGAACGTAACATAATTACGAGATTTATTTATTCACTCTTTTGGGGACTTCAGCAAATCAGTACTCTTGCTGGGAATCAAGTTCCAAGCTTTTTTGTGTGGGAAGTTCTGTTTACTATGGCCACTATTGGACTGGGTCTTTTTTTATTTGCTCTACTCATTGGAAATATGCAAAACTTCCTTCAGGCTCTTGGTCGGAGGAGGTTAGAAATGTCGTTAAGACGACGCGATGTCGAGCTATGGATGGGGCACCGACGTTTGCCTGTAGAACTAAGAAGGCGAGTACGAGAAGCCGAAAGGTATAGTTGGGCTGCAACGAGAGGCGTCAATGAAGAAAGGCTTTTGGAGAATTTGCCCGAAGACCTTCAAAAAAACATACGACGCCATCTCTTTAGATTTCTAAAGAAAGTGAGCCTTTGA 1356 42.04 MVVYNIIVDPEEYNFFNEFVQFHNAFYGDAKGWARKFWSYIPRVMNPHTKIIQKWNKFFVISCLAAIFLDPLFFFLLSVQQENKCIVIDWPMTTALVVFRSMTDFIYVLHILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGFFVVDLFAALPLPQIIILLILPRSLGTSGANYAKNLLRAAVLVQYIPRLFRFLPLLVGQSPSGFVFETAWANFVLNLFTFMLSGHVVGSFWYLFGLQRVNQCLRNACQNSGIQSCMTFIDCGHGDNLNRFDSYPTWKSWRDNENASSCFTPDGFSYGIYVQAVSLTSERNIITRFIYSLFWGLQQISTLAGNQVPSFFVWEVLFTMATIGLGLFLFALLIGNMQNFLQALGRRRLEMSLRRRDVELWMGHRRLPVELRRRVREAERYSWAATRGVNEERLLENLPEDLQKNIRRHLFRFLKKVSL 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1454981 1460025 + Bma027121.1 Bma08g00117 86944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00117 451 Gene3D Helix hairpin bin 378 443 - -
Bma08g00117 451 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 37 450 - -
Bma08g00117 451 SUPERFAMILY cAMP-binding domain-like 379 448 IPR018490 -
Bma08g00117 451 Gene3D - 56 376 - -
Bma08g00117 451 SUPERFAMILY Voltage-gated potassium channels 47 380 - -
Bma08g00117 451 Pfam Ion transport protein 55 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma08g00117 451 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00117 Bma-Chr8:1454981 Bma12g01267 Bma-Chr12:45691879 0 dispersed
Bma08g00117 Bma-Chr8:1454981 Bma12g01266 Bma-Chr12:45683027 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00117 K05391 - jre:109012085 678.707