Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00120 ATGATGAGGAAGAAGAGAGGTGAGGGTGAGAGCTCGGAGGCTCAGGAAGCAAGTGGTGGTGGAAGCCGAGGTGGTCCTCTGCGGCAAGGCGAAAGGGGTCCTCAACAGCAACAAGGAGGAAGAGGTTGGGGTCCTCAAGGTGGTCGAGGAGTCCCCCATGGAGGCCGAGGCCGTGGAATGCCTCAACCGCAACAGCATTATGAATATCAACCAAGAGGCAGGGGAGGACCACCTCCGCAGGGTGGTGGTCGTGGCGGCCATGGTGGAGGATTGCCTCCTTCAGGTGGGCCGTCCAGACCACCTGTTTCCGAGCTGCACCAAGCTTCCTTGGCTCCATATCAAGTTGGGGTGACTCAGCCCACACCAGGTGCGGGTAGTTCTTCTGCTCATCTGCCTGAAGCATCACAGATTGAGCAACAGTTTGAGCAGTTATCCGTTCATCAGGAAGCTGCTTCTAGTCAATCAATGCAGCCAATGCCACCCTCCAGCAAATCAATGAGGTTCCCACTTCGTCCTGGAAAGGGCAGCACTGGTAAAAGGTGCATTGTGAGGGCTAATCACTTTTTTGTCGAACTTCCTGACAAAGATCTGCATCAGTATGATGTTACAATTACCCCACAGCTGACTTCACGAGGTGTTAGTCGTGCTGTAATGAATCAGTTAGTGAGATCTTACAGGGAGTCTCACCTTGGTAAGAGGCTTCCTGCCTATGATGGTAGGAAAAGTCTGTATACTGCAGGCCCTCTTCCATTTCTATCAAAGGAATTTAAAATCACTCTCTTGGATGAAGATGATGGATCAGGCTCTCAAAGGAGGGAGAGGGAATTTAAGGTTGTGATCAAATTTGCTACACAACCTGACCTGCATCGTTTGGGGCTCTTTTTGGAAGGCAGACAGGCAGATGCTCCTCAGGAAGCCCTTCAGGTGCTGGACATTGTCCTCCGCGAACAGCCTACCTCTAGATATTGTCCGGTTGCGCGATCATTTTATGCGCCTGGTCTGGGAAGGCGTCAGCCGCTTGGCGAGGGATTGGAAAGTTGGCGTGGCTTTTATCAAAGTATTCGACCAACACAAATGGGACTGACTCTGAATATTGATATGTCTTCTACCGCTTTTTTTGAGCCATTGCCAGTCATTGACTTTGTTACTAAACTTCTTAATCGAGATGTGTCATCTCGGACACTGTCCGATGCTGATCGTGTGAAGATAAAGAAAGCTTTACGAGGAGTCAAGGTTGAAGTCACACATCGAGGTAACATGCGAAGAAGGTATCGTATTTCTGGTCTAACATCGCAGGCGACGAGCGAACTAACTTTCCCTGTTGATGAGATGGGTACAATGAAATCTGTTGTTGAGTATTTTTACGAAACCTATGGTTTCGTTATTCAACATACTCAATGGCCTTGTCTACAAGTTGGAAACCAGCAGAGACCTAATTATTTACCAATGGAGGTATGCAAGATTGTTGAGGGACAGAGGTACTCAAAGAGACTGAACAAGAAACAGATATCAGAATTGTTGAAAGTCAACTGCCAGCGTCCTCATGAAAGGGAGCAAAATATAATGCAGACTGTTAGGCATAACGCATATCATAATGATCCGTATGCAAAGGAGTTTGGGATTAAGATCAGTGAACAGCTTGCTTCTGTTGAAGCCCGTATCCTCCCTGCGCCTTGGCTCAAATACCATGACACTGGAAGGGAAAAAGATTGTTTGCCACAAGTGGGGCAATGGAACATGATGAATAAGAAAATGGTTAATGGTGGTACAGTTAACAACTGGATGTGCATTAATTTTTCTCGTTATGTACAAGACAATGTTGCCCAAAGATTCTGCAGTGAACTCGCTCAAATGTGTAATATATCTGGAATGGCTTACAATCCAGATCCGGTACTTCCCATACTTAGTGCTCGTCCTGATCAAGTGGAGAAGGTTCTTAAAACCCGGTATCATGATGCAATGACAAAACGTCAGCCACCATGCAAAGAACTTGATTTGCTTATTGTTATTCTTCCAGATGATAATGGGTCCCTATATGGTGATTTGAAGCGAATTTGTGAGACTGATCTTGGTCTTGTTTCACAATGCTGTTTGACAAAGAATGTGGCCAAAATGACTAAACAATATTTAGCTAATGTGGCTCTGAAGATTAATGTGAAAGTTGGGGGAAGGAATACCGTACTTGTTGATGCTGTTTTAAGGCAAATTCCTTTGGTTAGCGATGTTCCTACTATCATTTTTGGTGCTGATGTTACTCATCCTCCTCCAGGGGAGGATTCTAGCCCATCCATTGCTGCTGTTGTGGCTTCCCAAGATTGGCCTGAAGTTACCAAGTATGCTGGTTTGGTTTCTGCCCAGGCACACAGACAAGAGCTCATTCAAGACCTGTTTAAACAGTGGCAAGATCCAGTCAGAGGAGCAGGATCTGGAGGAATGATCAAGGAACTCCTCATATCGTTCCGAAGAGCTACTGGACATAAACCTCAACGAATAATCTTTTACAGGGATGGAGTGAGCGAGGGACAGTTCTATCAGGTTTTGCTGCATGAACTTGACGCCATTAGGAAGGCTTGTAATTCTTTGGAACCCAATTATCAGCCTCGAGTTACATTTGTTGTAGTTCAGAAGCGGCACCACACTCGATTATTTACTAACAACCATCGTGACTACAATACAGTTGACCGGAGTGGCAACATATTACCTGGTACGGTCGTGGACACAAAGATTTGTCATCCTACTGAATTTGACTTCTACCTATGCAGCCACGCAGGAATACAGGGTACTAGCCGCCCAGCTCACTACCACGTTCTATGGGATGAGAATGAGTTCACAGCTGATGGGTTGCAATCCCTAACCAATAACCTTTGCTACACTTATGCTAGGTGTACACGATCTGTATCCATTGTTCCCCCTGCATACTATGCCCATCTTGCTGCATTTAGAGCTCGATTCTACATGGAGCCAGACACGTCAGATAGCGGGTCAATGACGAGTGGAGCTGCAGCTGGACGTGGTGGCGCTCGTAGCTCTCACCCATCGGTGGCATCGGCAGTGAGACCTTTGCCTGCGCTGAAGGAGAATGTTAAACGAGTTATGTTTTACTGCTAA 3108 46.49 MMRKKRGEGESSEAQEASGGGSRGGPLRQGERGPQQQQGGRGWGPQGGRGVPHGGRGRGMPQPQQHYEYQPRGRGGPPPQGGGRGGHGGGLPPSGGPSRPPVSELHQASLAPYQVGVTQPTPGAGSSSAHLPEASQIEQQFEQLSVHQEAASSQSMQPMPPSSKSMRFPLRPGKGSTGKRCIVRANHFFVELPDKDLHQYDVTITPQLTSRGVSRAVMNQLVRSYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFKITLLDEDDGSGSQRREREFKVVIKFATQPDLHRLGLFLEGRQADAPQEALQVLDIVLREQPTSRYCPVARSFYAPGLGRRQPLGEGLESWRGFYQSIRPTQMGLTLNIDMSSTAFFEPLPVIDFVTKLLNRDVSSRTLSDADRVKIKKALRGVKVEVTHRGNMRRRYRISGLTSQATSELTFPVDEMGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNKKQISELLKVNCQRPHEREQNIMQTVRHNAYHNDPYAKEFGIKISEQLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWMCINFSRYVQDNVAQRFCSELAQMCNISGMAYNPDPVLPILSARPDQVEKVLKTRYHDAMTKRQPPCKELDLLIVILPDDNGSLYGDLKRICETDLGLVSQCCLTKNVAKMTKQYLANVALKINVKVGGRNTVLVDAVLRQIPLVSDVPTIIFGADVTHPPPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKQWQDPVRGAGSGGMIKELLISFRRATGHKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACNSLEPNYQPRVTFVVVQKRHHTRLFTNNHRDYNTVDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENEFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDTSDSGSMTSGAAAGRGGARSSHPSVASAVRPLPALKENVKRVMFYC 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1483433 1490684 + Bma027124.1 Bma08g00120 86947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00120 1035 SMART Piwi_a_2 666 987 IPR003165 GO:0003676
Bma08g00120 1035 Gene3D paz domain 369 494 - -
Bma08g00120 1035 SUPERFAMILY PAZ domain 370 530 IPR036085 GO:0005515
Bma08g00120 1035 ProSiteProfiles PAZ domain profile. 376 490 IPR003100 GO:0005515
Bma08g00120 1035 MobiDBLite consensus disorder prediction 995 1014 - -
Bma08g00120 1035 Pfam Argonaute linker 1 domain 325 373 IPR014811 -
Bma08g00120 1035 MobiDBLite consensus disorder prediction 143 162 - -
Bma08g00120 1035 Pfam PAZ domain 380 506 IPR003100 GO:0005515
Bma08g00120 1035 SMART PAZ_2_a_3 380 512 IPR003100 GO:0005515
Bma08g00120 1035 Gene3D - 554 729 - -
Bma08g00120 1035 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 68 1034 - -
Bma08g00120 1035 MobiDBLite consensus disorder prediction 1 104 - -
Bma08g00120 1035 Pfam Glycine-rich region of argonaut 66 161 IPR024357 -
Bma08g00120 1035 Pfam Mid domain of argonaute 573 648 IPR032473 -
Bma08g00120 1035 MobiDBLite consensus disorder prediction 143 176 - -
Bma08g00120 1035 CDD Piwi_ago-like 534 986 IPR045246 -
Bma08g00120 1035 SUPERFAMILY Ribonuclease H-like 662 988 IPR012337 -
Bma08g00120 1035 Pfam Argonaute linker 2 domain 516 562 IPR032472 -
Bma08g00120 1035 CDD PAZ_argonaute_like 375 489 - -
Bma08g00120 1035 Gene3D - 735 1035 IPR036397 GO:0003676
Bma08g00120 1035 Pfam N-terminal domain of argonaute 179 314 IPR032474 -
Bma08g00120 1035 PANTHER PROTEIN ARGONAUTE 1A 68 1034 - -
Bma08g00120 1035 SMART DUF1785_2 323 375 IPR014811 -
Bma08g00120 1035 ProSiteProfiles Piwi domain profile. 666 987 IPR003165 GO:0003676
Bma08g00120 1035 Pfam Piwi domain 667 986 IPR003165 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00821 Bma-Chr2:44708823 Bma08g00120 Bma-Chr8:1483433 0 dispersed
Bma06g01574 Bma-Chr6:52016946 Bma08g00120 Bma-Chr8:1483433 0 dispersed
Bma07g00301 Bma-Chr7:3717719 Bma08g00120 Bma-Chr8:1483433 3.36E-160 dispersed
Bma08g00120 Bma-Chr8:1483433 Bma11g00328 Bma-Chr11:3073852 4.48E-157 dispersed
Bma14g00429 Bma-Chr14:5006971 Bma08g00120 Bma-Chr8:1483433 0 transposed
Bma14g00876 Bma-Chr14:9884168 Bma08g00120 Bma-Chr8:1483433 6.65E-113 transposed
Bma15g00144 Bma-Chr15:1501899 Bma08g00120 Bma-Chr8:1483433 0 transposed
Bma12g01262 Bma-Chr12:45660405 Bma08g00120 Bma-Chr8:1483433 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00120 K11593 - zju:107419730 1618.98