Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00121 ATGGCCTCTCTCAAAGCTTTGAAGCTCTCCGATTCAATGTCCGACAACACGGCGGACGAGATGAATAAAAGCCGGTTTCATCTGAAGAAATGCTTTGCAAGGTTTTGTCAACGTGGGAAGAGGTTGATGAAACGCAATCACTTAATGAAAGAGGTGGAGAAAACAGTAAGAGATAGACGTGAAAGGAAAATGGTTTTGGAAGGAGTTCTTGGATATATCCTCAGTTGTACTCAGGAAGCAGCTGTTGTTCCGCCACACGTGGCTCTTTCCGTGAGGCCGAATCCCGGGTTTTGGGAGTTCATAATGGTGAATGCAGATACCTTGGACACAAATGACCTCTCCACTTCAGACTACTTGAAATTCAAAGAAATGATCTTTGATGAAAATTGGTCGAAGGATGAAAATGCCCTCGAAATAGATTTTGGAGCCATCGATTTCTCTACTCCCCTCTTGACTCTCCCTTCCTCCATTGGTAATGGACTTGGCTTTATATCGAAGTCCATTGCTTCGAGGTTGAGCCGAAACTCGGAAGATGCCAAAATTCTTGTCGATTATCTGCTTTCTCATGTCAAAATTCTTGCCGACCATGACCATCGAGGAGAGAAGCTGATGATCAATGAGACACTTGACAATGTTTCCAAACTTCAAGCAGCTTTGATTGCTGCTGAAGTTTATGTTTCTTCACTCCCTAAAAACACATCATATCATGAATTTGAGAAAAGGCTAGAAGAGTGGGGATTTGAGAAGGGATGGGGTGACACTGCAGAGAGAGTGAAAGAGACAATGAGAGCTCTTTCAGAGATTCTTGAAGCACCTGATCCATTAAAAATGGAGTCTTTCTTTGGCAAACTTCCTTGTATTTTCAACATTGTGATCTTCTCTCCACACGGTTATTTCGGTCAGTCGGACGTGCTCGGACTTCCCGACACAGGCGGCCAGGTAGTTTACATTCTAGATCAAGTGAAAGCTTTAGAGGATGAGTTGCTCCTCAGAATTAAGCAGCAAGGCCTCAGTGTGAAGCCTCAATTCTTGTGGTAG 1038 43.74 MASLKALKLSDSMSDNTADEMNKSRFHLKKCFARFCQRGKRLMKRNHLMKEVEKTVRDRRERKMVLEGVLGYILSCTQEAAVVPPHVALSVRPNPGFWEFIMVNADTLDTNDLSTSDYLKFKEMIFDENWSKDENALEIDFGAIDFSTPLLTLPSSIGNGLGFISKSIASRLSRNSEDAKILVDYLLSHVKILADHDHRGEKLMINETLDNVSKLQAALIAAEVYVSSLPKNTSYHEFEKRLEEWGFEKGWGDTAERVKETMRALSEILEAPDPLKMESFFGKLPCIFNIVIFSPHGYFGQSDVLGLPDTGGQVVYILDQVKALEDELLLRIKQQGLSVKPQFLW 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1491941 1493610 + Bma027125.1 Bma08g00121 86948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00121 345 Pfam Sucrose synthase 11 344 IPR000368 GO:0005985|GO:0016157
Bma08g00121 345 Gene3D - 150 286 - -
Bma08g00121 345 Gene3D - 11 149 - -
Bma08g00121 345 Gene3D Glycogen Phosphorylase B; 287 345 - -
Bma08g00121 345 PANTHER SUCROSE SYNTHASE 5 4 344 - -
Bma08g00121 345 PANTHER - 4 344 IPR012820 GO:0005985|GO:0016157
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00121 K00695 SUS; sucrose synthase [EC:2.4.1.13] - cit:102615807 456.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00121 Bma-Chr8:1491941 Bma10g00985 Bma-Chr10:22585700 8.84E-91 dispersed
Bma08g00121 Bma-Chr8:1491941 Bma02g00565 Bma-Chr2:11710197 1.20E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g984 . . . . . . . . Cmo13g01158 . . . . . . Cpe20g00043 . . . . . . . . . . . . . . . . . Cone13ag0362 . Lsi02g00041 Csa01g00517 Chy12g01568 Cme12g02024 . . . . . . . Bma08g00121 . . . . . Car13g00943 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025069 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00121 Bma_Chr08 FPKM 12.712963 22.660997 20.339378 17.456501 24.584978 22.057787 18.230379 15.12658 14.210425 13.856316