Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00134 | ATGAATTCCATAGTTTCCCTCTCTACCCTCTTTTTCTCTCTCCTTCTCCCCATTCTCCTCTCTCCAACGTCCACCCTTGCTAGCGAAACGAAGCTCCAAGGCCTCAACGTCAACGCCATTGACAAGTGCTGGAGATTAAACCCGGACTGGAGAAGACACCGGCAGCAGCTGGCGACCTGCTCCGTTGGATTTTCCGGCAAGATGATCAACAATATAGGCAAGAATCTGAAACTGTACAGAGTTACAGACCCGAGCGACGACCCGTTAAACCCGAAGAAGGGAACTCTCAGATATGGAGCCACCATGATTAAGGGCAAAGTATGGATCACATTTCAGAGAAATATGATCATCAAACTCGAAAGACCTCTTCTCATCAGCAGCTTCACGGCCATTGACGGCCGAGGAGTTAGCGTTCATATAACTGGAAATGCTTGCTTGACAGTTTACAAGGAAACCAATATAATAATTCATGGTCTAGTAATCCACCACTGCAAGTCTCAAGCTGCAACCCAAGTGATGGGAACTAATGGGAAGATAGTGGGAATGGGCAACGTCGATGGCGATGCCATCCGGCTCGTGTCGGCGTCGAAGGTGTGGATCGACCACAACACGCTCTACCAATGCGAGGACGGGCTGTTGGACGTAACGAGAGGGTCGACAGACATCACAATCTCTAACAACTGGTTTAGGGACCAGGACAAAGTCATGCTTTTGGGACACGACGACGGGTTTGTTAGAGACAGGGACATGAAAGTCACTCTTGTTTTCAACCATTTCGGACCGAATTGCAACCAACGAATGCCCCGGATTCGGCACGGCTATGCACATGTTGCGAACAACTTGTACCAGGGATGGACTCAATACGCCATTGGCGGTAGCATGAATCCGAGAGTTAAGAGTGAGGCCAACCTATTCATAGCGCCTAAATCAGGAAGCAAGGAGTTGATATGGACGACAGGAGGGCTGGGAAGGAAGAGCTCATGGAAGTTTTTCTCAGTAGGAGATGTTCTTGAAAATGGAGCTACTTTCAGTGAAGCAGGCACACGGCTGAGCCTGAGGACACTAGCTGCAAAGCCAGGCTACAGCGCCCAACAATGGTTCAAAGTAGCAGATGCTAAGTATCTAAGACAATTGACAAGTTCTTCAGGAGCTCTAAAATGCAGCAGAAATTCAAGATGT | 1179 | 48.6 | MNSIVSLSTLFFSLLLPILLSPTSTLASETKLQGLNVNAIDKCWRLNPDWRRHRQQLATCSVGFSGKMINNIGKNLKLYRVTDPSDDPLNPKKGTLRYGATMIKGKVWITFQRNMIIKLERPLLISSFTAIDGRGVSVHITGNACLTVYKETNIIIHGLVIHHCKSQAATQVMGTNGKIVGMGNVDGDAIRLVSASKVWIDHNTLYQCEDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGFVRDRDMKVTLVFNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPRVKSEANLFIAPKSGSKELIWTTGGLGRKSSWKFFSVGDVLENGATFSEAGTRLSLRTLAAKPGYSAQQWFKVADAKYLRQLTSSSGALKCSRNSRC | 393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1745547 | 1747134 | + | Bma031421 | Bma08g00134 | 86961 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00134 | 393 | Gene3D | - | 37 | 386 | IPR012334 | - | |
Bma08g00134 | 393 | SUPERFAMILY | Pectin lyase-like | 34 | 387 | IPR011050 | - | |
Bma08g00134 | 393 | PRINTS | Pollen allergen Amb family signature | 60 | 77 | IPR018082 | - | |
Bma08g00134 | 393 | PRINTS | Pollen allergen Amb family signature | 266 | 285 | IPR018082 | - | |
Bma08g00134 | 393 | PRINTS | Pollen allergen Amb family signature | 122 | 138 | IPR018082 | - | |
Bma08g00134 | 393 | PRINTS | Pollen allergen Amb family signature | 288 | 307 | IPR018082 | - | |
Bma08g00134 | 393 | PRINTS | Pollen allergen Amb family signature | 186 | 207 | IPR018082 | - | |
Bma08g00134 | 393 | PRINTS | Pollen allergen Amb family signature | 328 | 352 | IPR018082 | - | |
Bma08g00134 | 393 | PANTHER | PECTATE LYASE | 23 | 390 | - | - | |
Bma08g00134 | 393 | PANTHER | PECTATE LYASE 18-RELATED | 23 | 390 | IPR045032 | GO:0030570 | |
Bma08g00134 | 393 | Pfam | Pectate lyase | 143 | 305 | IPR002022 | - | |
Bma08g00134 | 393 | SMART | amb_all | 114 | 311 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00134 | Bma-Chr8:1745547 | Bma01g01699 | Bma-Chr1:51761013 | 4.87E-103 | dispersed | |
Bma08g00134 | Bma-Chr8:1745547 | Bma08g00137 | Bma-Chr8:1806437 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00134 | K01728 | - | csv:101217103 | 557.755 |