Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00134 ATGAATTCCATAGTTTCCCTCTCTACCCTCTTTTTCTCTCTCCTTCTCCCCATTCTCCTCTCTCCAACGTCCACCCTTGCTAGCGAAACGAAGCTCCAAGGCCTCAACGTCAACGCCATTGACAAGTGCTGGAGATTAAACCCGGACTGGAGAAGACACCGGCAGCAGCTGGCGACCTGCTCCGTTGGATTTTCCGGCAAGATGATCAACAATATAGGCAAGAATCTGAAACTGTACAGAGTTACAGACCCGAGCGACGACCCGTTAAACCCGAAGAAGGGAACTCTCAGATATGGAGCCACCATGATTAAGGGCAAAGTATGGATCACATTTCAGAGAAATATGATCATCAAACTCGAAAGACCTCTTCTCATCAGCAGCTTCACGGCCATTGACGGCCGAGGAGTTAGCGTTCATATAACTGGAAATGCTTGCTTGACAGTTTACAAGGAAACCAATATAATAATTCATGGTCTAGTAATCCACCACTGCAAGTCTCAAGCTGCAACCCAAGTGATGGGAACTAATGGGAAGATAGTGGGAATGGGCAACGTCGATGGCGATGCCATCCGGCTCGTGTCGGCGTCGAAGGTGTGGATCGACCACAACACGCTCTACCAATGCGAGGACGGGCTGTTGGACGTAACGAGAGGGTCGACAGACATCACAATCTCTAACAACTGGTTTAGGGACCAGGACAAAGTCATGCTTTTGGGACACGACGACGGGTTTGTTAGAGACAGGGACATGAAAGTCACTCTTGTTTTCAACCATTTCGGACCGAATTGCAACCAACGAATGCCCCGGATTCGGCACGGCTATGCACATGTTGCGAACAACTTGTACCAGGGATGGACTCAATACGCCATTGGCGGTAGCATGAATCCGAGAGTTAAGAGTGAGGCCAACCTATTCATAGCGCCTAAATCAGGAAGCAAGGAGTTGATATGGACGACAGGAGGGCTGGGAAGGAAGAGCTCATGGAAGTTTTTCTCAGTAGGAGATGTTCTTGAAAATGGAGCTACTTTCAGTGAAGCAGGCACACGGCTGAGCCTGAGGACACTAGCTGCAAAGCCAGGCTACAGCGCCCAACAATGGTTCAAAGTAGCAGATGCTAAGTATCTAAGACAATTGACAAGTTCTTCAGGAGCTCTAAAATGCAGCAGAAATTCAAGATGT 1179 48.6 MNSIVSLSTLFFSLLLPILLSPTSTLASETKLQGLNVNAIDKCWRLNPDWRRHRQQLATCSVGFSGKMINNIGKNLKLYRVTDPSDDPLNPKKGTLRYGATMIKGKVWITFQRNMIIKLERPLLISSFTAIDGRGVSVHITGNACLTVYKETNIIIHGLVIHHCKSQAATQVMGTNGKIVGMGNVDGDAIRLVSASKVWIDHNTLYQCEDGLLDVTRGSTDITISNNWFRDQDKVMLLGHDDGFVRDRDMKVTLVFNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPRVKSEANLFIAPKSGSKELIWTTGGLGRKSSWKFFSVGDVLENGATFSEAGTRLSLRTLAAKPGYSAQQWFKVADAKYLRQLTSSSGALKCSRNSRC 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1745547 1747134 + Bma031421 Bma08g00134 86961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00134 393 Gene3D - 37 386 IPR012334 -
Bma08g00134 393 SUPERFAMILY Pectin lyase-like 34 387 IPR011050 -
Bma08g00134 393 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Bma08g00134 393 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Bma08g00134 393 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Bma08g00134 393 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Bma08g00134 393 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Bma08g00134 393 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Bma08g00134 393 PANTHER PECTATE LYASE 23 390 - -
Bma08g00134 393 PANTHER PECTATE LYASE 18-RELATED 23 390 IPR045032 GO:0030570
Bma08g00134 393 Pfam Pectate lyase 143 305 IPR002022 -
Bma08g00134 393 SMART amb_all 114 311 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00134 Bma-Chr8:1745547 Bma01g01699 Bma-Chr1:51761013 4.87E-103 dispersed
Bma08g00134 Bma-Chr8:1745547 Bma08g00137 Bma-Chr8:1806437 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00134 K01728 - csv:101217103 557.755