Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00169 ATGTCTTCCATTGCAACCACTCTGCTTCAACGTCCGTCCACTTCTTCTAAGCACGCCGAAAGTTGTTGTTTCGACCCCATCCATCGCCGCCGTCTTCTCGCCGCCGTAACTTTCTCCGTCCCTGCCTTTAATTTCACTATCCCTCCTCACCCAACTTCTCCCATCTCCGTTTCTATCCCTGTCGCCGAGGCTCGTGGCCTGTTGCAGATGCCCCCTTTGCGGCTCAACAACCGGTACTTTCTGGTGAGGGCCGGGGAGTCTGAATTCGAGAGTATAGGCATAATCAACACCAACCCGGTTTCAAAGACATCGGTTGATAGTGGGTTATCCGTAAAAGGAAAAAATCAGATTTTGAAATTGGCTTTTGAGTTGAAGGAATTGGAAGCTTGTGAAAAGGGGTGTTGGATATGGCCTTCTATTACCCAGAGAGCTTATCAGTCTGCAGAGATCATTGCATCAGTTAATGGAATCAGTAGAAGTTACATAGTTCCGGAGTATAGTTTTCTCGATGCACGGGGGCTCGGAGCTTACGAAGGGAAGAGCTTGGAATCTGTTTCAGAGGTCTATGCATCTGATAACATTTCTTCCACCATCAAACCTCCGCCTATTGACGACGGGACTCCAAACGAGAGTGTTTCCGATGTCTTTGTTCGTATAACTCAATTAATGTCGATTCTCGAGACCCAATACTCCGGCGAAACTGTTATTATCGTGTCGCCGGATTCCGACAACTTGACTGTTCTTCAAGCCGGTTTGGTTGGGCTCGACTTGAAAAGGCATCGGGAGCTTTCGTTTGAAGCCGGGGAAGTTCGTATTGTCGATCCGAGTAGCATTCCTCCTTACAAGCAACCAACATCTGCTGTGTATAAATCCCTAAAGCCACCCAATTCTTTTTCCTCTAAAAAATTTGCCAATATTGTCGTCTTTGATATCTTTTTCCTGCATTTGATGATCCGAGCGAGCCGATCTCGTACTGATTCTTTTGTTTTGGAATTCGCTAGTCACTGTAATTCCTCTCTGAAAACAGGCGCAATTTTTTTTTCGTTTTTTTTTTGCTGTTATGTGTTTGTGCATTTCTCTTTGGTAAAGCAGTTTGTGCGAACTGTAGTTGATTATACTGCTGTTTTTATTTTCCGTCTATTGATGTTTGTAGATAATGGTCTTGCAGCTGGAATGGGTTTGGATTTTGGATGGCAGCAGAGATATGCTCGTTTTTGTGGAAGATTAGTAGTACTTTCGATTCTTTCTTTGCTTCTCTATCCATTTCTTTGGACTTGGACCATAATTGGTACCTTGTGGTTCAGAGAAGCTAAAAATTGTTTGCCCGAAGAAGGTCAGAAATGGGGCTTTCTTATTTGGTTGCTTTTTAGCTACTGTGCGCTCCTCTCTATTGCTTGCATGTCATTGGGAAAGTGGTTGACTCGTAGACAAGCACACTTATTACGTGCTCAGCAAGGGATACCAGTGTCAGAGTATGGGGTTTTAGTTGACATGATACGAGTACCAGAATGGGCATTTGAAGCTGCAGGACAAGAATTGAGAGGCATGGGCCAAGATGCTGCTCCATATCATCCTGGACTGTACTTGACTCCTGCTCAGAGGGAAGCTGTTGAAGCACTCATTCAGGAACTTCCAAAGTTCAGGTTGAAAGCTGTTCCAACGGATTGTAGCGAATGCCCCATTTGTCTTGAAGAGTTTCGTGTACGTGGACTGCCTTGTGCTCATAATTTTCATGTAGAATGTATCGACCAGTGGCTTCGACTGAACGTGAAATGTCCTCGATGCCGCTGCTCTGTCTTCCCAAATCTCGATCTTAGTGCTCTATCCAGTCTTCAAGCTGATACAGAACGGTCATCAGCTACTGTCGTTACAGCGAACCGCTATATGAGAGCCCAACCTTCGAGCCAGAGCTATCTCTTAAGGTTGCAGGGCCTGCTTCGCCAAGTGCGTACAGAAAATGCCGAGGCAAGCCCCGAAGCAGCTAGCTCTTTCGAAGCTATCGAGAATGGTCGTATTTCTATGGCTACTCCGCTTTCATCGAACACAGAATCGCCTTCCGCCGGACTCACTATTGCTGGTCAGTCCACCTCATCACAACTGTAA 2103 45.74 MSSIATTLLQRPSTSSKHAESCCFDPIHRRRLLAAVTFSVPAFNFTIPPHPTSPISVSIPVAEARGLLQMPPLRLNNRYFLVRAGESEFESIGIINTNPVSKTSVDSGLSVKGKNQILKLAFELKELEACEKGCWIWPSITQRAYQSAEIIASVNGISRSYIVPEYSFLDARGLGAYEGKSLESVSEVYASDNISSTIKPPPIDDGTPNESVSDVFVRITQLMSILETQYSGETVIIVSPDSDNLTVLQAGLVGLDLKRHRELSFEAGEVRIVDPSSIPPYKQPTSAVYKSLKPPNSFSSKKFANIVVFDIFFLHLMIRASRSRTDSFVLEFASHCNSSLKTGAIFFSFFFCCYVFVHFSLVKQFVRTVVDYTAVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRLVVLSILSLLLYPFLWTWTIIGTLWFREAKNCLPEEGQKWGFLIWLLFSYCALLSIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPEWAFEAAGQELRGMGQDAAPYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALSSLQADTERSSATVVTANRYMRAQPSSQSYLLRLQGLLRQVRTENAEASPEAASSFEAIENGRISMATPLSSNTESPSAGLTIAGQSTSSQL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2071303 2084598 - Bma027169.1 Bma08g00169 86996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00169 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 309 677 - -
Bma08g00169 700 SUPERFAMILY RING/U-box 541 604 - -
Bma08g00169 700 Pfam Ring finger domain 558 596 IPR001841 -
Bma08g00169 700 MobiDBLite consensus disorder prediction 676 700 - -
Bma08g00169 700 Pfam Histidine phosphatase superfamily (branch 1) 80 274 IPR013078 -
Bma08g00169 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 309 677 IPR044793 GO:0004842|GO:0010182
Bma08g00169 700 SMART ring_2 559 595 IPR001841 -
Bma08g00169 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 601 IPR013083 -
Bma08g00169 700 Gene3D - 77 281 IPR029033 -
Bma08g00169 700 SUPERFAMILY Phosphoglycerate mutase-like 79 275 IPR029033 -
Bma08g00169 700 ProSiteProfiles Zinc finger RING-type profile. 559 596 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00169 Bma-Chr8:2071303 Bma04g00744 Bma-Chr4:7997018 6.39E-11 dispersed
Bma08g00169 Bma-Chr8:2071303 Bma07g00317 Bma-Chr7:3806447 4.72E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00169 K16284 - qsu:112040934 525.013