Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00170 ATGAATAGCGTTCATTTCTACACTCCCTCGACCTCCTTGCGCCGGTTCCCGAAATCCTTCTCGCTGCGGAAGAAGGTTCCTCGGTGGTCCCAAATTCTCGAACCGGATTCTGAATTCGTAACCAAATGGAACTATGTCTTCCTCGTTACCTGCCTCATCGCCCTCTTTCTCGACCCTCTATACTTCTACCTCCCCGACATCGGGGGCCCCGCCTGCATGCAGATCGACATCGGCCTCGGAATTCTCGTCACCTTCTTCCGAACCGTTGCCGACTTGTTCTACCTCTTCAACATGATCATGAAATTCCGGACGGCGTTTGTCGCGCCGAGCTCTAGGGTTTTCGGACGGGGTGAGCTCGTGATGGATCCCAAGGCGATTGCAGCCCGATACCTCAAGTCGAATTTTGTAATCGATCTTGCCGCAACACTTCCACTACCACAGATTGTGATCTGGTTTGTGATTCCGGCGGTAAAAAGCCCGACAGCTGCGAATGCTAACCATACTCTAGCTCTAATCGTCCTCATCCAATATGCGCCTCGTTTGTTCCTCATTTTCCCGTTAAACCAACGAATCAACAAAACTACCGGAGCAATAGCCAAGACGGCTTGGGTCGGAGCTGCCTACAATCTCCTCCTCTACATGTTAGCCAGTCACGTTATTGGAGCAGCGTGGTATGTGGCGTCGATTCAACGGCAGCACGAGTGTTGGAAAATAGAATGTAAAAAAGAGATGAACACCACACACTCTCCATCGTGTGTTTTGTTTTTTCTCGATTGCGATAGTTTGAACGAGCCGGCACGGCGCGCTTGGCTAGGAATCACTCATGTCCTTACCAACTGCGATGCTTCAAATGACGATCGAAACTTTCAGTTCGGAATGTTTGCTGAAGCATTCACTGATGATGTTGCCTCCTCGCATTTTATCGAGAAATACTTCTATTGCCTTTGGTGGGGTTTGAAGAATTTAAGTTCATATGGACAGAACATAATGACGAGCACATTTAGCGGCGAAACGCTGTTTAGTATTGTGATTTGCTCGTTGGGTCTGGTTCTTTTTTCGCATCTCATCGGCCAAGTTCAGAACTACCTTCAATCTTCGACGGCTAGACTCGAAGAATGGAGGGTCAAACGAAAAGATACCGAGGAATGGATGAGGCATCGACAACTTCCACCCGAGTTACAAGAACGAATTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGCGTAGACGAAGAATCGATTTTACGTGCTTTGCCTTTAGACCTCAAACGCCAAATTCAAAGACATCTTTGTCTCACACTTGTTCGTCGTGTTCCATTCTTTGCACAGATGGATGATCAGCTTCTGGACGCCATATGCGAGAGATTAGTTTCTTCATTGAACACCAAAGACACGTTCATAACCCGAGAAGGTGATCCGGTGAACGAAATGCTTTTCGTCATTCGGGGGCAGCTCGAGAGCTCGACCACCAATGGCGGAAGGTCGGGATTCTTCAACTCCATCACCCTCCGACCGGGAGATTTCTGCGGCGAAGAGCTGCTGACATGGGCGCTGATTCCCTCCTCAAACGTGAACTTTCCTTCCTCGACACGGACCGTAAAATCTGTCACCGAAGTCGAAGCCTTCGCCCTCCGAGCAGAAGATCTCAAGTTCGTAGCGAGCCAATTCAAGCGGCTGCACAGCAAGAAACTGCAGCACGCCTTTCGATACTACTCTCATCAATGGCGGACGTGGGGAGCTTGCTTTATTCAAGCTGCATGGAGGCGACACGTCAAGAGGAAGCTGGCGATGGAGCTGGCCCGGCAGGAGGAGGCGTACTATTCGTCTGTTCTGAACCAAGAAGATGACAGCAAAAGAAGTGAACTTTCTGGAGAGTTAGATGATGAAAATGGGGAGAGTTCAAGCAGATCTCAGCATTTGGGAGCCATTGTTTTTGCTTCGAAAGTTGCAGCAAATACCAGAAGAGGAGGAGGTAAGGGTAAGGTTTCTGTGCTTAACCCTGATGCTGCTAGCTTGAAGATGCCCAAGCTGTTCAAGCCCGAGGAGCCCTGA 2058 49.22 MNSVHFYTPSTSLRRFPKSFSLRKKVPRWSQILEPDSEFVTKWNYVFLVTCLIALFLDPLYFYLPDIGGPACMQIDIGLGILVTFFRTVADLFYLFNMIMKFRTAFVAPSSRVFGRGELVMDPKAIAARYLKSNFVIDLAATLPLPQIVIWFVIPAVKSPTAANANHTLALIVLIQYAPRLFLIFPLNQRINKTTGAIAKTAWVGAAYNLLLYMLASHVIGAAWYVASIQRQHECWKIECKKEMNTTHSPSCVLFFLDCDSLNEPARRAWLGITHVLTNCDASNDDRNFQFGMFAEAFTDDVASSHFIEKYFYCLWWGLKNLSSYGQNIMTSTFSGETLFSIVICSLGLVLFSHLIGQVQNYLQSSTARLEEWRVKRKDTEEWMRHRQLPPELQERIRRFVQYKWIATRGVDEESILRALPLDLKRQIQRHLCLTLVRRVPFFAQMDDQLLDAICERLVSSLNTKDTFITREGDPVNEMLFVIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALIPSSNVNFPSSTRTVKSVTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRHVKRKLAMELARQEEAYYSSVLNQEDDSKRSELSGELDDENGESSSRSQHLGAIVFASKVAANTRRGGGKGKVSVLNPDAASLKMPKLFKPEEP 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2120933 2124311 - Bma027171.1 Bma08g00170 86997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00170 685 Pfam Ion transport protein 43 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma08g00170 685 Pfam Cyclic nucleotide-binding domain 465 553 IPR000595 -
Bma08g00170 685 Gene3D Jelly Rolls 440 560 IPR014710 -
Bma08g00170 685 MobiDBLite consensus disorder prediction 618 636 - -
Bma08g00170 685 MobiDBLite consensus disorder prediction 618 641 - -
Bma08g00170 685 SUPERFAMILY Voltage-gated potassium channels 35 364 - -
Bma08g00170 685 Gene3D - 44 366 - -
Bma08g00170 685 ProSiteProfiles cAMP/cGMP binding motif profile. 442 572 IPR000595 -
Bma08g00170 685 Gene3D Helix hairpin bin 368 433 - -
Bma08g00170 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 685 - -
Bma08g00170 685 SUPERFAMILY cAMP-binding domain-like 371 567 IPR018490 -
Bma08g00170 685 CDD CAP_ED 442 573 IPR000595 -
Bma08g00170 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 5 685 - -
Bma08g00170 685 SMART cnmp_10 442 573 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00170 Bma-Chr8:2120933 Bma13g00522 Bma-Chr13:10439032 0 dispersed
Bma08g00170 Bma-Chr8:2120933 Bma08g00382 Bma-Chr8:8627202 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00170 K05391 - csv:101209760 1084.32