Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00172 ATGAGAAAGTTTTCTCGGGATGATTTGTTTTGTGTCTGCTGTGGTTGGCTTTCTCAACACTCTTACCAAACTGATCCCGATTTGTATGTCAATAGCTACACATTTCAGAGCAGTGATCTTCTACGCCGAGCAATGACCCATTCTTCTTATTCCAACGAGAATAACAAGGCACTTGCAATTCTCGGTTCCTATGTCATCGACACAGCAGTTGCCTCTCGTTTGCTGGAAAAAGACATTGATATTTCTCCCAAAGATCTCACTCGTCGAATATCTGAAATATCAAGCATCGAGTCATCTTGTGCAGTTGATGCAGTGCGGTTGGGTTTGCAGAAGGTGGTTAGAGTTTCCACCAAGACTAATTCTACCACTCCGTCCGTGGTTTGCGGAGCTTTCCGATCAATTTTCAGCGCGATTGCTATTGATTCCGGGAGATCTGATGTTGGTGGAGACATTTTCTTGAAGGTTCATGGTAATTATATCGATTCTACCATGTCATTGTAG 501 43.11 MRKFSRDDLFCVCCGWLSQHSYQTDPDLYVNSYTFQSSDLLRRAMTHSSYSNENNKALAILGSYVIDTAVASRLLEKDIDISPKDLTRRISEISSIESSCAVDAVRLGLQKVVRVSTKTNSTTPSVVCGAFRSIFSAIAIDSGRSDVGGDIFLKVHGNYIDSTMSL 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2149183 2149683 + Bma027173.1 Bma08g00172 86999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00172 166 Gene3D Ribonuclease III domain 30 164 IPR036389 GO:0004525|GO:0006396
Bma08g00172 166 CDD RIBOc 39 162 IPR000999 GO:0004525|GO:0006396
Bma08g00172 166 ProSiteProfiles Ribonuclease III family domain profile. 33 143 IPR000999 GO:0004525|GO:0006396
Bma08g00172 166 SUPERFAMILY RNase III domain-like 32 148 IPR036389 GO:0004525|GO:0006396
Bma08g00172 166 Pfam Ribonuclease-III-like 38 145 IPR000999 GO:0004525|GO:0006396
Bma08g00172 166 SMART riboneu5 39 165 IPR000999 GO:0004525|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00172 - - - cit:102611771 176.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00172 Bma-Chr8:2149183 Bma12g00178 Bma-Chr12:2403527 5.95E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0894 Cone16ag0115 . . . . . . Blo13g00051 . . . . . . Bma08g00172 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018181 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00172 Bma_Chr08 FPKM 0.0 0.0 0.0 0.136847 0.0 0.0 0.0 62.340061 63.40855 62.468372