Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00176 ATGCATGGGAGGGGAGGTGAGGAGAGGAAACGGGCTCGGCACATGTTGACAGTCTCTACGCGTGGCACCACGATTGTAGCGGCCGATGATTTTTCTTCCTCGTCGTCTTCACCTGATTCGTTTTGCAAGGATGGACGCAAGATTACTCTTGGCGACTGTGCACTTTTCAAACCACCGCATGATGCTCCGCCTTTCATTGGCATAATACGGTGGTTTAATGTTGACAAAGAAAATAAGTTAAAGTTAGGTGTGAATTGGCTCTATCGACCTTCTGAAGTCCAGCTTGGCAAAGGCATCCTATTGGAAGCTGCGCCAAACGAAGTTTTCTATTCCTTTCACAGGGATGCAATTCCTGCTGCATCTTTACTTCATCCGTGTAAAGTTGCATTCCTTCCTAAAGACGCTGATCTCCCATCAGGAATTTTATCATTTGTGTGCCGGCGTGTCTATGACATAACCAACAAGTGCTTATGGTGGTTAAATGATAAGGACTATATTAATGAACGCCAAGAAGAGGTAGACCAGTTATTATTTAGGACGCAAATAGAGATGCATACAACAGTGCATCCTGCTGGCCGATCACCCAAGCCAACATCACAATTAAAAGCTAGTTCAGATAGCAATGCTGTATCTGCTCAGATCAAAGGGAAGAAGAGGGACAGGGGGGATCAGAGTTCTGAGCCCATTAAACGAGAGCGAATTGCAAAAACGGATGACGGGGAGTATGGTCACTGCAAACTGGAAAGCTTTTTGAAAAGTGAGATTGCCAAAATTACAGACAAGGGAGGTCTTGTAGACTTGGATGGGGTTGAGAAATTGATTCAGCTAATGCTTTCAGAAGCAAGTGATAAAAAAATAGATTTGGCTGGCAGATCAATACTTGCTGGTGTGATAGCATCAACAGAAAAGGTTGAATGTCTTAGTCAGTTTGTGCATCATAAGGGTTTGCCTGTCTTTGATGAATGGCTCCAAGACGTCCACAAAGGAAAAATTGGCGATAGCAGCAGTTCCAAGGAGTGTGATAAGTCCGTTGAAGAATTCCTTTTGATTTTACTCCGGGCACTTGATAAACTTCCTATAAATCTTCTGGCTTTACAAATGTGTAACATCGGAAAATCTGTGAATAATTTACGAACACACAAGAACACAGAAATTCAGAAGAAAGCTAGAAGTTTAGTAGATACATGGAAGAAACGGGTTGGAGCAGAAATGAGTATCAATGATTCAAAGTCGGGGTCGAACCAAAGCGTTCCTTGGACCACAAAACCACGTCTTTCTGAAGTTTCTCATGGGGGGCGAAACCAAGGTATATCCTCTGAGGCTGCCATGAAGAGTACTGTTACACAGCTTTCTACATCCAAAGCTGCATCAGTTAAGGTTGTACACGATGAGATAATTGGCAAGTCTGCTTCTGCTTCTCCTGGCTCCATGAAATCAGTACCATCACCAGCATCAGCAAGTATTACTTCAAAAGATGGAGTTCCCAGAACTCATGCTGTTAGTAGTGCCAATGATCTTCCTCAAACAGTGGTAAGAGATGAGAAAAGCAGCAGCTCTAGTCAGTCTTACAATAATAGTCAGTCTTGTTCCAGTGAACATGCTAAAACTGGGGGTATGGGGAAGGAGGACGCCAGAAGCTCTACTGCTGGTTCAGTTGCAACGAATAAAACTCCAGGTGGTTCTTCAAGACAGCGCAAGTCTGTTAACGGCTTCCCTGGCTCGCCTGCATCTGGAGCCCAAAGGGAAACAATATCAGGAAAAAATACTCTGGTGCACAAAGGTACAGCTTCAGAGAGAATATCGCAATGTGGAATTTCATGCGACAAGACACCAGATTTAACTTTTGGTGAGGGACACGGTCATAAGTTTATTGTTAAGATCACAAATCGTGGTCGGAGTGCAGGACTAATTGCCAGTGCTGGATCTGTTGACGACCCTTCATTGTTAAATACTAGGTCCTCTTCTCTTGGTCTTTCTGAGAAGCATGATCATTTTGATTGCAGCTCGAAGGAAAAGGGTGATGCTCATCAAGCTACAGTCATTTCAGCCGGAGATGATGTGGGAATGAACTTACTTGCTAGTGTGGCTGCTGGAGTGATGTCCAAGTCTACCTTAGAATCCCCTACTGATTCTCCGCAAAGAAATCTTGCTGCAGTTGATAATTCCTATGTGAAAAATGAATTGAAAGTTAAAGCATCTAATGATGGTGTTAGTGAAAGTAAACAAAATGTTGATGCTAAGTTGGCTTCACAGGATAAACAGAAGTCTGCTGGGGAACCCAATGGACATTTAAGTTCTGGTTTAATCATGAGTGAAACCACAAAGGGATCCCTAGAGGTTAAAGCAGAAAAGCGAGAAAATATTTCAGCTGTCTCCCCTGTAAGCTCATTTGAGAAAACAAACGAAAGGGATGGAGCTAAACCAGAGAAAACCACCACTGGTGTACTGAATGGAGATATCAAGTTAGAATCTAAAAAAATGTCCAGTTGCTCTATGACAGATGAAGATATGGTGAATAATAGTGTTCCAAGTCTAGATGTTGAGGTGGATATGGTTGAGGGATCGTCTTTATCAAATCCATTGTCTGAGTCTGATGGGAAGAATGGTGGGGAACTGACTGAGAAAAAGGCTTCTTTGGAGAAACATCCTGATTCCGCAGAAGGTACGAACGATAAAGTTCAACATTGTATTGCTTTGGTTGGGGATTTGACCACGGTGAGCTCTAGGGAAATGAATACTGAGAAGAATGATGAAATTGGGGCTGTAATTGATTTTGAACAACCCAATAAACAACCTGATTGTGATGCTAATGTTATGCTTGAGATCCAAGATTTAGCACGGGGTTCAACTGCTCCTAATCATGATGGGGAACACTTGAAAGAGAACTTGAAATGTAAAGATGGTGAACAAAATGGTGGACAAGCTGATCCCAAGGTGCTAGTTGTATTTCCCGTACAAGATGTTGATCAGTGTCTGAAATCTAGGGAATCCAAGTTAAGTGGAATTGAAGCAGAGGAAGCAGATGAATCTACATCTAGGAGTGGTGATGCTTCTTCTGAATCAGCTGCGGGGATATCTGACAATGATACAAAGGTGGGTTTTGATTTGAATGAAGGCTTTGATGTGGATGATGGGAAATGTGGGGATCCTTCTACCTCAACAGCATCGGACTGCCTAGCTAATGTTCGGTTAATTAGCCCAGTACCTTTTCCTATATCTGCTGTATCAAGCACCATCCCATCTTCAATTACTGTGGCTGCTGCAGCAAAAGGGCCCTTTGTACCTCCAGAAGACCTATTGAGGAGTAAAGGAGAACTTGGTTGGAAAGGATCAGCTGCCACAAGTGCATTTCGACCAGCTGAACCAAGAAAACATTGGGAGGTGCCATTCGGTACAACAAGTACTTCACTTTCTGAGCCCTCAGTCAGAAAAAACAGTCGCCCTCCCTTGGAATTTGACTTGAATATACCCGATGAGAGAATCCTTGAAGATATGAATCCTCGAAGTTCTGCTGCGGTGTCAGTCTCCAACAATAGGGAGAATAATAATTTGCGACATGAAATAGGCTTGAAATCAGTGCGGGGTTCAGGTGGGTTTGATCTTGATTTAAACCAAGTCAATGAATTTCCTGACACAAGCAATTACGCAACAAACAATGATCGAAGAACTGACATTGCATTTTCAGTTAAATCAACTGCTAATCCTCTCCGTAATCATCTCATTGGCGAAGGGAGTATTCGTCGAGATTTTGATTTGAATGGACCATTTATGGATGAAGCAGGGGTTGAATTGTCACATTTTAGTCAGCACGCCAAGAGCAATGTGCCATCTCAGGCTCCTGTTTCTGGTCTTTGGGTGAATAATGCAGAATTAGGAAACTTATCTTCATGGTTTCCTCCTGGTAACACTTATGCGAATGCGACAATACCTTCAATCATGACTGACAGGGATGAGCATTCATTCCCTGTTGTTTCCACCGGTGGATCTCAAAGGATGTTGGGTCCCACAAGTGGTGTCAACCCATTTAGCCCTGATGTTTATCGGGGACCAGTATTGTCTTCATCGCCTGCTGTTCCTTTCCCTCCTGCACCTTTCCAATATTCTGTATTGTCTTTTGCAAACAGCTTTCCTTTACCATCAGCCAATCATGCGACTGGTTCAACGACATACCTGGATTCACAAGGTGGCAGGTTTTGCTTCCCTGCAGTTCATTCACAGTTATTAGGACCCACAGGTCAAGTCTCAACCCATTACCCAAGGCCTTTTGTCGTTGGACTTCCAGATGGTAGCAATAGCAGTAGTCCTGAAGTTAGCAAAAAATGGGGAAGACAGGGTTTAGATCTCAATGCTGGACCTGGATGTCCGGATGCGGAAGGGAAAGACGAAACTTTTGCTCCCAGGCAGCTATCTATTGTTGGTTCTCAGACGCAGCAAGAGGACCGAGTAAGAATGTATCAGCCTGCTGGGAGCTTGGTAAAGAGGAAGGAGCCAGATGGAGGGTGGGATGGCTACAAGCAATCCTCATGGCAATAA 4533 43.57 MHGRGGEERKRARHMLTVSTRGTTIVAADDFSSSSSSPDSFCKDGRKITLGDCALFKPPHDAPPFIGIIRWFNVDKENKLKLGVNWLYRPSEVQLGKGILLEAAPNEVFYSFHRDAIPAASLLHPCKVAFLPKDADLPSGILSFVCRRVYDITNKCLWWLNDKDYINERQEEVDQLLFRTQIEMHTTVHPAGRSPKPTSQLKASSDSNAVSAQIKGKKRDRGDQSSEPIKRERIAKTDDGEYGHCKLESFLKSEIAKITDKGGLVDLDGVEKLIQLMLSEASDKKIDLAGRSILAGVIASTEKVECLSQFVHHKGLPVFDEWLQDVHKGKIGDSSSSKECDKSVEEFLLILLRALDKLPINLLALQMCNIGKSVNNLRTHKNTEIQKKARSLVDTWKKRVGAEMSINDSKSGSNQSVPWTTKPRLSEVSHGGRNQGISSEAAMKSTVTQLSTSKAASVKVVHDEIIGKSASASPGSMKSVPSPASASITSKDGVPRTHAVSSANDLPQTVVRDEKSSSSSQSYNNSQSCSSEHAKTGGMGKEDARSSTAGSVATNKTPGGSSRQRKSVNGFPGSPASGAQRETISGKNTLVHKGTASERISQCGISCDKTPDLTFGEGHGHKFIVKITNRGRSAGLIASAGSVDDPSLLNTRSSSLGLSEKHDHFDCSSKEKGDAHQATVISAGDDVGMNLLASVAAGVMSKSTLESPTDSPQRNLAAVDNSYVKNELKVKASNDGVSESKQNVDAKLASQDKQKSAGEPNGHLSSGLIMSETTKGSLEVKAEKRENISAVSPVSSFEKTNERDGAKPEKTTTGVLNGDIKLESKKMSSCSMTDEDMVNNSVPSLDVEVDMVEGSSLSNPLSESDGKNGGELTEKKASLEKHPDSAEGTNDKVQHCIALVGDLTTVSSREMNTEKNDEIGAVIDFEQPNKQPDCDANVMLEIQDLARGSTAPNHDGEHLKENLKCKDGEQNGGQADPKVLVVFPVQDVDQCLKSRESKLSGIEAEEADESTSRSGDASSESAAGISDNDTKVGFDLNEGFDVDDGKCGDPSTSTASDCLANVRLISPVPFPISAVSSTIPSSITVAAAAKGPFVPPEDLLRSKGELGWKGSAATSAFRPAEPRKHWEVPFGTTSTSLSEPSVRKNSRPPLEFDLNIPDERILEDMNPRSSAAVSVSNNRENNNLRHEIGLKSVRGSGGFDLDLNQVNEFPDTSNYATNNDRRTDIAFSVKSTANPLRNHLIGEGSIRRDFDLNGPFMDEAGVELSHFSQHAKSNVPSQAPVSGLWVNNAELGNLSSWFPPGNTYANATIPSIMTDRDEHSFPVVSTGGSQRMLGPTSGVNPFSPDVYRGPVLSSSPAVPFPPAPFQYSVLSFANSFPLPSANHATGSTTYLDSQGGRFCFPAVHSQLLGPTGQVSTHYPRPFVVGLPDGSNSSSPEVSKKWGRQGLDLNAGPGCPDAEGKDETFAPRQLSIVGSQTQQEDRVRMYQPAGSLVKRKEPDGGWDGYKQSSWQ 1510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2167215 2172796 - Bma027177.1 Bma08g00176 87003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00176 1510 MobiDBLite consensus disorder prediction 469 595 - -
Bma08g00176 1510 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 730 817 - -
Bma08g00176 1510 SMART TFS2_5 323 402 IPR003617 GO:0005634
Bma08g00176 1510 MobiDBLite consensus disorder prediction 472 534 - -
Bma08g00176 1510 ProSiteProfiles BAH domain profile. 46 161 IPR001025 GO:0003682
Bma08g00176 1510 MobiDBLite consensus disorder prediction 1468 1483 - -
Bma08g00176 1510 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 679 1510 - -
Bma08g00176 1510 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 681 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 406 443 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 187 235 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 733 773 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 1129 1143 - -
Bma08g00176 1510 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 679 1510 - -
Bma08g00176 1510 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 681 - -
Bma08g00176 1510 SMART BAH_4 46 161 IPR001025 GO:0003682
Bma08g00176 1510 MobiDBLite consensus disorder prediction 547 595 - -
Bma08g00176 1510 Pfam BAH domain 48 155 IPR001025 GO:0003682
Bma08g00176 1510 MobiDBLite consensus disorder prediction 868 889 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 192 212 - -
Bma08g00176 1510 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 305 414 IPR035441 -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 999 1013 - -
Bma08g00176 1510 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 268 404 IPR035441 -
Bma08g00176 1510 ProSiteProfiles TFIIS N-terminal domain profile. 317 403 IPR017923 -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 403 443 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 999 1030 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 213 235 - -
Bma08g00176 1510 CDD TFIIS_I 327 400 - -
Bma08g00176 1510 Gene3D - 31 249 IPR043151 -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 854 890 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 1427 1510 - -
Bma08g00176 1510 MobiDBLite consensus disorder prediction 1113 1150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00176 - - - bhj:120071278 1596.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00176 Bma12g01028 CCT
Bma08g00176 Bma12g01028 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00250 Bma-Chr4:2134193 Bma08g00176 Bma-Chr8:2167215 8.78E-14 dispersed
Bma07g01645 Bma-Chr7:52044850 Bma08g00176 Bma-Chr8:2167215 9.99E-21 transposed
Bma01g01007 Bma-Chr1:10269303 Bma08g00176 Bma-Chr8:2167215 0 wgd
Bma12g01028 Bma-Chr12:42370694 Bma08g00176 Bma-Chr8:2167215 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57713 PF01426 BAH 1.30E-08 No_clan Bma TR