Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00194 ATGGCGTCCGCTTCTCAACCCGGAGACCCCTCGCCCTCTATTTTTATCTCGCCAGAATGGTCTGAGGCTGCCGACTCCATAGCGAACGATTTTAGACCGTCTTCTGCTCCGGTTGCTCTTATATGCGGCCCGAAAAATTGTGGCAAAACTACCTTCTCCCGCCATCTCGTTAATGTTCTCCTCCATAGGTGTAGAAAAGTAGCTTATTTGGATACAGATGTTGGTCAGCCTGAGTTTACACCACCGGGTTTCTTATCCCTGACTGTCATTGACAGTCTAACTATTGATTTGGCAATTCCATGCTTAAAGACCCCAGAAAGATGCTTTTTCTTTGGTGATGTTTCTTCAAAAACGGATCCAAAAGCATACTTGACTTATATATACTCCCTGCATGATTACTACCGAAAGGAGTATTGCTCGCTTAGCAAGAGTGAGATGACTGAAGTGCCTCTTGTTATAAATACGCCGGGTTGGGTGAAAGGTGTTGGTTATGAGATTTTGGTGGATATGTTGAAGCATATTGCTCCTTCTCATGTAGTAAAAATAAACATATCTGCTGAAAGTAAGAATCTACCGGATGGGGCATTTTGGTTAGATGACGAAAATGATGATGAGATCACTCTAATTAACATCAATTCTGCTCGTCAGGACTCCTTCAACAGATCGATACTAGTACAAAAAGATTCACGGCGAATACGAGATTTAAAAATAATGGCTTATTTCAGGCAGTGCTTTCCTGGTGACTTGAATATCACCACCATTAAGGAACTTGCCCATGCCCTGGCCTCTCATCCTCCTTATCAAGTTCCTATATCAAGTATCAAAATTAAACATCTCCACTGCCGGGTCCCAAGAACTGAAATCTTTTATAGCTTGAATGCTTCCATTGTTGGCTTGGCAATCAGTTCTGGAGCCTCTCAAAATTTACCTTGGTGTGTTGGTTTGGGAATTGTGCGAGCTATTGACGTGTCAAAAGGTTTCCTATATGTCATCACGCCAGTTTTGCCGGATACTTTGGAAAAGGTCGATCTACTTCTGCAGGGCTACATACAGCTTCCTACTTGCTTATTGGAGGTAACTAATCCAGCTCTGAACCGACCGTTGTACTTTCCATTTAGGCATCGCCTAACATGA 1134 42.95 MASASQPGDPSPSIFISPEWSEAADSIANDFRPSSAPVALICGPKNCGKTTFSRHLVNVLLHRCRKVAYLDTDVGQPEFTPPGFLSLTVIDSLTIDLAIPCLKTPERCFFFGDVSSKTDPKAYLTYIYSLHDYYRKEYCSLSKSEMTEVPLVINTPGWVKGVGYEILVDMLKHIAPSHVVKINISAESKNLPDGAFWLDDENDDEITLININSARQDSFNRSILVQKDSRRIRDLKIMAYFRQCFPGDLNITTIKELAHALASHPPYQVPISSIKIKHLHCRVPRTEIFYSLNASIVGLAISSGASQNLPWCVGLGIVRAIDVSKGFLYVITPVLPDTLEKVDLLLQGYIQLPTCLLEVTNPALNRPLYFPFRHRLT 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2331366 2334806 + Bma027198.1 Bma08g00194 87021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00194 377 PANTHER OS01G0354700 PROTEIN 14 361 - -
Bma08g00194 377 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 14 361 IPR045116 GO:0006396|GO:0051731
Bma08g00194 377 Gene3D - 17 245 IPR027417 -
Bma08g00194 377 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 43 242 IPR032319 -
Bma08g00194 377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 88 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00194 K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] - zju:107418513 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00194 Bma-Chr8:2331366 Bma13g00504 Bma-Chr13:9624131 4.66E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g467 . . . . Bpe12g00569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0107 . . Chy12g01307 Cme12g01732 Blo13g00034 . . . . . . Bma08g00194 . . . . . . Car18g00131 . . . . . . . . . Cla01g01406 Cam01g1468 Cec01g1511 Cco01g1555 Clacu01g1494 Cmu01g1388 Cre01g1305 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011454 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00194 Bma_Chr08 FPKM 22.529964 29.078175 54.090702 55.661335 55.580166 46.012455 56.246159 21.28158 20.753223 20.962143