Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00196 ATGGATCCTCCCCTAGTAAACGAGTCTTCCTTCTCGACCGCCAACCCGTCTGCTTACAGCTTGGCTGAGATATGGCCGTTCCGCGGAGCATCCGACGGAGTACTGGGACTACGAACCGGTAATTTGGGTCGAAATCTTGGTGGGTTAGCTGAGGGTTCTGGAAATCGTGATGGGTCGGCGGAGGAATCGACAGTGACTGAGCAGAGCGGGGGCGGAGGGAAGAGGAAGAGGGTGGATGTGAGCTCGGAGGATGACATGATTCGAAGTGGTAAAAGAATGAAAATGGGGGAATCTAGAGATGAGAATGGTGGTGCGAAAGCTGAAGAAACAAGCTCAGCTAATGGTAACAAACCCGGCGAACCAATCTCTAAAATATTGGAGCCACCTAAAGATTATATTCATGTGAGAGCGAGGAGAGGCCAAGCTACTGATAGCCACAGTCTGGCAGAACGAGCCAGGAGAGAGAAAATAAGTGAGAGAATGAAAATCCTTCAAGACTTGGTTCCGGGATGTAATAAGGTTATTGGAAAGGCACTCGTTCTCGATGAGATTATCAATTACATTCAATCCTTGCAGCATCAGGTCGAGTTTCTGTCGATGAAGCTTGAAGCAGTTAATTCAAGAATAAATAGGAACCCAAGCATTGAAGGCTATAATACCAAGGATGTTGTAAGTCAATCATTACTGAGAAAAATTACATGA 702 46.58 MDPPLVNESSFSTANPSAYSLAEIWPFRGASDGVLGLRTGNLGRNLGGLAEGSGNRDGSAEESTVTEQSGGGGKRKRVDVSSEDDMIRSGKRMKMGESRDENGGAKAEETSSANGNKPGEPISKILEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRINRNPSIEGYNTKDVVSQSLLRKIT 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2338932 2340443 - Bma027200.1 Bma08g00196 87023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00196 233 MobiDBLite consensus disorder prediction 38 128 - -
Bma08g00196 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 209 IPR036638 GO:0046983
Bma08g00196 233 Coils Coil 188 208 - -
Bma08g00196 233 Gene3D - 138 216 IPR036638 GO:0046983
Bma08g00196 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 191 IPR011598 GO:0046983
Bma08g00196 233 Pfam Helix-loop-helix DNA-binding domain 145 192 IPR011598 GO:0046983
Bma08g00196 233 CDD bHLH_AtBPE_like 131 214 - -
Bma08g00196 233 SMART finulus 147 197 IPR011598 GO:0046983
Bma08g00196 233 MobiDBLite consensus disorder prediction 72 106 - -
Bma08g00196 233 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 227 - -
Bma08g00196 233 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 227 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00196 Bma12g01018 CCT
Bma08g00196 Bma12g01018 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00196 Bma-Chr8:2338932 Bma14g01759 Bma-Chr14:37842115 1.31E-58 dispersed
Bma01g00077 Bma-Chr1:746806 Bma08g00196 Bma-Chr8:2338932 6.18E-53 wgd
Bma12g01018 Bma-Chr12:42230454 Bma08g00196 Bma-Chr8:2338932 6.51E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57715 PF00010 HLH 1.70E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00196 - - zju:107418528 304.679