Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00196 | ATGGATCCTCCCCTAGTAAACGAGTCTTCCTTCTCGACCGCCAACCCGTCTGCTTACAGCTTGGCTGAGATATGGCCGTTCCGCGGAGCATCCGACGGAGTACTGGGACTACGAACCGGTAATTTGGGTCGAAATCTTGGTGGGTTAGCTGAGGGTTCTGGAAATCGTGATGGGTCGGCGGAGGAATCGACAGTGACTGAGCAGAGCGGGGGCGGAGGGAAGAGGAAGAGGGTGGATGTGAGCTCGGAGGATGACATGATTCGAAGTGGTAAAAGAATGAAAATGGGGGAATCTAGAGATGAGAATGGTGGTGCGAAAGCTGAAGAAACAAGCTCAGCTAATGGTAACAAACCCGGCGAACCAATCTCTAAAATATTGGAGCCACCTAAAGATTATATTCATGTGAGAGCGAGGAGAGGCCAAGCTACTGATAGCCACAGTCTGGCAGAACGAGCCAGGAGAGAGAAAATAAGTGAGAGAATGAAAATCCTTCAAGACTTGGTTCCGGGATGTAATAAGGTTATTGGAAAGGCACTCGTTCTCGATGAGATTATCAATTACATTCAATCCTTGCAGCATCAGGTCGAGTTTCTGTCGATGAAGCTTGAAGCAGTTAATTCAAGAATAAATAGGAACCCAAGCATTGAAGGCTATAATACCAAGGATGTTGTAAGTCAATCATTACTGAGAAAAATTACATGA | 702 | 46.58 | MDPPLVNESSFSTANPSAYSLAEIWPFRGASDGVLGLRTGNLGRNLGGLAEGSGNRDGSAEESTVTEQSGGGGKRKRVDVSSEDDMIRSGKRMKMGESRDENGGAKAEETSSANGNKPGEPISKILEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRINRNPSIEGYNTKDVVSQSLLRKIT | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2338932 | 2340443 | - | Bma027200.1 | Bma08g00196 | 87023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00196 | 233 | MobiDBLite | consensus disorder prediction | 38 | 128 | - | - | |
Bma08g00196 | 233 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 139 | 209 | IPR036638 | GO:0046983 | |
Bma08g00196 | 233 | Coils | Coil | 188 | 208 | - | - | |
Bma08g00196 | 233 | Gene3D | - | 138 | 216 | IPR036638 | GO:0046983 | |
Bma08g00196 | 233 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 141 | 191 | IPR011598 | GO:0046983 | |
Bma08g00196 | 233 | Pfam | Helix-loop-helix DNA-binding domain | 145 | 192 | IPR011598 | GO:0046983 | |
Bma08g00196 | 233 | CDD | bHLH_AtBPE_like | 131 | 214 | - | - | |
Bma08g00196 | 233 | SMART | finulus | 147 | 197 | IPR011598 | GO:0046983 | |
Bma08g00196 | 233 | MobiDBLite | consensus disorder prediction | 72 | 106 | - | - | |
Bma08g00196 | 233 | PANTHER | MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 227 | - | - | |
Bma08g00196 | 233 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 1 | 227 | IPR024097 | GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00196 | Bma12g01018 | CCT | |
Bma08g00196 | Bma12g01018 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00196 | Bma-Chr8:2338932 | Bma14g01759 | Bma-Chr14:37842115 | 1.31E-58 | dispersed | |
Bma01g00077 | Bma-Chr1:746806 | Bma08g00196 | Bma-Chr8:2338932 | 6.18E-53 | wgd | |
Bma12g01018 | Bma-Chr12:42230454 | Bma08g00196 | Bma-Chr8:2338932 | 6.51E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57715 | PF00010 | HLH | 1.70E-08 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00196 | - | - | zju:107418528 | 304.679 |