Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00201 ATGCTTCAGCACAAGACTTCTGGGCAAGGTTCTTTTTCCCTTCAATCTGATGATGGCGAAGTTCTAGATTCAGATGCTGCCGTGTCTGAAGATGCTGATGAGTTGAAACTTCAAGAAGAGGAATTTAGACAGAAAATTGAGCTTGAAGCTGAAGAAAGAAAGCTTGAAGAGACTTTAGAATATCAAAGACGAATTGAGGAGGAAGCCAAGCAGAAGCATCTTGCTGAGCAACACAAGAATTCTGTTCAGACATATCCGGAAGAAAAGATCACAGAACAACCGATAGAAGGCAACGCATTTCCCACAAATTTTGATGGCTTGCCCATGAATGGCACTCCAACACCATTGAGACTTCATGATACTGCAGAATTGTCTAATGGTAGAATTTTCGAGAATTGTCTCCCACCTTATGATCGACGGACTAGAAGGAAAGGTAGACGATCAAAGGGTTCTGCTAAATTGGTCAATGGAAGGTATCAAACCATAGCATTTGACCAGGATATTTGTGATTTAGAAGCTAGGAGTTCACAGCTTGATAATCCAGTAAAAGAGCAATATAAATTTCATGACAATCCCCTGGCAGATGGTGATAATGGTACAACCTCATTAAGTCATTTACAAGTGGAGGAGGAGGAACGGTTCAAAGCTGATCTTAAAAAGGCTGCGCTCCAAAGCCTTGATGCATCCAAGGCACACAAGAAGCTGCCAACGGTTTCAGGAGTGGGAAAGCCACCTATCACTTCTGCTGTAGTGGATCACATTGGCGTTTCATCAAATGATGTAAAAGGAGAAATTGCAAAGAGAACAGATGTATTTGGTACAGGGCTGAAGAATGAAGTTGGTGAATATAATTGCTTTCTTAATGTCATTATACAGTCCTTGTGGCATTTAAGACCGTTTCGAGATGAGTTCCTTAGTAGGTCTACCATTGAGCATGTTCATGTGGGGGATCCTTGTGTTGTCTGTGCATTATATGAAATCTTCACCTCCCTGAGCATTGCATCCACCGCTGGTCAACAAGAACCGGTGGCCCCCTCTTCTCTGAGAATGGCTCTTAGCAACCTCTACCCTGATAGTAATTTCTTTCAGGAGGGTCAGATGAATGATGCTTCTGAAGTCCTAGAAGTGATATTTGCCTGCCTTCACCAAGCATTTATGTCTACTAGTTTACGGGTTTCTGATGCTGAATTAGTTGATAGCAACAGCATCGGGTCTTGGGATTGTGGAAATGATGTTTGTATAGTGCATTCCATTTTTGGTCTGGACATTTTTGAACGAATGAACTGTTGCAGTTGTGGACTTGAGTCCAGATATTTAAAGTATACTTCCTTCTTCCACAATGTAAATGCAAGCGCCCTCCGAGCTACAAAGGTTATGTGTGAAGAAAGCTCGTTTGATGAGCTTTTAAATGTAGTTGAAATGAACCATCAGGTCGCTTGTGATCTGGAGGCTGGTGGATGTGGAAAGCTCAACTATATCCATCACTTTCTTGCATCTCGTCCACATATCTTCACAACAGTTTTGGGATGGCAGAATGCATGTGAGAGTGTTGATGACATAACAGCAACATTATCTGCTCTAAGTACTGAAATAGATATCGGTGCCCTTTATCGTGGTCTAGATCCGAAAAATACACTTAGTTTGGTCTCGGTGGTTTGCTACTATGGGCAACACTATCACTGCTTCGCATATAGTCATGAGCATGAATGCTGGATTATGTATGATGATAAAACTGTTAAGGTAATTGGTAGCTGGGCTGAAGTTCTTACCATGTGTGAGAAGGGGCATTTGCAACCTCAGGTTCTTTTCTTCGAAGCTGTAAACTAG 1827 41.93 MLQHKTSGQGSFSLQSDDGEVLDSDAAVSEDADELKLQEEEFRQKIELEAEERKLEETLEYQRRIEEEAKQKHLAEQHKNSVQTYPEEKITEQPIEGNAFPTNFDGLPMNGTPTPLRLHDTAELSNGRIFENCLPPYDRRTRRKGRRSKGSAKLVNGRYQTIAFDQDICDLEARSSQLDNPVKEQYKFHDNPLADGDNGTTSLSHLQVEEEERFKADLKKAALQSLDASKAHKKLPTVSGVGKPPITSAVVDHIGVSSNDVKGEIAKRTDVFGTGLKNEVGEYNCFLNVIIQSLWHLRPFRDEFLSRSTIEHVHVGDPCVVCALYEIFTSLSIASTAGQQEPVAPSSLRMALSNLYPDSNFFQEGQMNDASEVLEVIFACLHQAFMSTSLRVSDAELVDSNSIGSWDCGNDVCIVHSIFGLDIFERMNCCSCGLESRYLKYTSFFHNVNASALRATKVMCEESSFDELLNVVEMNHQVACDLEAGGCGKLNYIHHFLASRPHIFTTVLGWQNACESVDDITATLSALSTEIDIGALYRGLDPKNTLSLVSVVCYYGQHYHCFAYSHEHECWIMYDDKTVKVIGSWAEVLTMCEKGHLQPQVLFFEAVN 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2384899 2389428 - Bma027205.1 Bma08g00201 87028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00201 608 MobiDBLite consensus disorder prediction 1 35 - -
Bma08g00201 608 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 274 607 IPR028889 -
Bma08g00201 608 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 2 88 - -
Bma08g00201 608 CDD Peptidase_C19 366 605 - -
Bma08g00201 608 PANTHER UBIQUITIN SPECIFIC PROTEINASE 2 88 - -
Bma08g00201 608 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 114 608 - -
Bma08g00201 608 PANTHER UBIQUITIN SPECIFIC PROTEINASE 114 608 - -
Bma08g00201 608 SUPERFAMILY Cysteine proteinases 274 605 IPR038765 -
Bma08g00201 608 Coils Coil 32 68 - -
Bma08g00201 608 Gene3D Cysteine proteinases 258 606 - -
Bma08g00201 608 MobiDBLite consensus disorder prediction 1 18 - -
Bma08g00201 608 Pfam Ubiquitin carboxyl-terminal hydrolase 275 603 IPR001394 GO:0004843|GO:0016579
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00201 Bma12g01008 CCT
Bma08g00201 Bma12g01008 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01008 Bma-Chr12:42171855 Bma08g00201 Bma-Chr8:2384899 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00201 - - vvi:100256959 741.11