Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00203 ATGACAATCTTGTACTTTTATTTTACAAGCCTTTTTTTTTTCTTACATAAAAACTACCTTTTTTCCCTCCTTTTCTTCCTTCTACTATTTGGGAGGGGCCTCCAGTTTTTGCCACAGGACAGGGTTTGTGAGTTTGCAAAACTGACTCCTGTGCAACTTCTAGAAGAGACTGAAAAAGCTATTGGCGATACTCAACTTCCAGGTCAACATCGTGCGCTTGTTGAAAAAAGCCGTGAAATAAAGAATATAGAGCGGGCTGTGGAAAAAAATGGGGACACATTGAATCAGTTGAAGGCACTAAATGCTGAGCTAGAGAAGGATGTTGAGCGTGTTCGTCAAAGGGAAATACTTCTAGCAAAGGCTGAGTCCATGAAAAAGAAATTGCCGTGGCTTAAGTATGATATAAAGAAGGTTGAATATATAGAATTGAAGGATAAGGAGAATGATGCCAAAAAGAAGTTGGATGAAGCAGCAACGACATTAAATGGTCTCAAAGAACCCATTGAGAAACATAAAAAGGAGAAAGCAGTGGTGGATGCTAAAAGCAAAAAAATTAGCAATATCATGAATAATAATACGAGGAAACGAATTGAGCTTTTAGATAATGAAAACCATTTGGGGGTAGAAGTACAAGGCAAGTACAAAGAAATGGGAGATTTGAGGAAGCAAGAAGAGTCTCGGCAACAAAGAATTATACAAGCTAAGGAGGAACTTGTTGCAGCTGAACTAGAGCTTCAAAATTTGCGTCCCTATTGTGTTCCAAGGGAGGATATTGAAAGATTAGCTAGTCAAATAATGGATCTTGAACTTTCTGCAAATCAAAAGAGGTTGTCTAAGACAGAGAGCGAAAAAGTCTTAGCTCAAAAAAGGATAGCCTTGAGACAGTGCTTAGACAGGTTAAAGGATATGGAAAGCAAACATACTAAACTTTTGCAGGCATTGGAAAATTCTGGAGCTGATAAGATTTCTGATGCTTACCACTGGTTGCAAGAACATCGCCATGATTTCAACAAGGAGGTTTATGGTCCAATTTTGCTTGAGGTTAATGTTTCTAATCAGATTCATGCTGACTACTTGGAAAGCCAAACCCCTTATTACATCTGGAAGTCTTTTGTAACTCAAGATTCTAATGATCGTGACCTTTTGGTCAAAAGTTTCAAATCATTTGATGTTCCCATTTTGAATTACGTGGATGATGAGGGTCGTCGAAAAGAAAAATTTGAAATTACTGAGGAGATGCGCAAACTTGGCATCTATTCTAGGCTCGACCAAGTTTTTGATGCTCCCAACTCTGTGAAGGAAGTTTTGATCAGTCAGTTTGGTTTGGATCGCTCATATATTGGTTCTAAGGAGACTGATCAGAAGGCAGATGCAGTTTCAAAATATGGAATTTTAGATTTTTGGACTCCAGAAAATCACTATCACTGGTCTGTATCCAGATACGGTGACCATATGACTGGAAATGTGGAACCAGTGGAGCGCTCCCGTCTTCTTCTGTGCAATAAGGATGTGGGTGAAATTGATGGTTTGAGATCGAGGAAAAGTGAACTGGAAGAATCTGTCGCAGCTTTAGAAGAAAGCCATAAGTCTTTTCAGATTGAGATAAGAAACATAGAAAATGAAACAGCTAAACTTCGTAAACAACGGGAGGACATTATCAGCATTGTGCACCAGGAGAAGAGGAAGCGTCGGGAAATGGAAAATCGTATCAATCAAAGGAAAAAGAAACTAGAATCCATGACACAAGAGGAAGACTTGGAGACTTGCATAGCAAAGCTTAATGATCAAGCTGCAGGTATATCTATTCAACGGTTCCGATGTGCAATAGAGATTAAGAATCTACTTGTAGACACTGTATCCCACAGACGAAGTTTTGCTCAACATCATTTGTCATCAATTGAATTTGATGCTAAGATTAGAGACATGGAATTCAATATGAAGAAACAGGAGAAGGATGCTATGCAAGCATCATTGCACTTAGAGAATTGTAAGAAGGAAGTAGAGGATTGTAGACAGCAACTGTCAGTTGCTAAGAGGCATGCGGAATCAATTGCTGTGATCACTCCTGAACTTAAAAAGGATTTTCTTGAGATGCCAACTACAATCGAAGAATTGGAGACCGCAATTCAAGACAATATTTCTCAAGCTAATTCTATTCTATTCTTGAACCACAACATATTAGAGGAGTATGAACATAGACAGAGTCAGATAAGAAGCATTGCAACAAAACTTGAAACTGATCAAGAGGAGCTGAAAAGGCGGGTCACTGAAGTTGATGATCTCAAGAAAAATTGGCTTCCTACTTTAAGAAACCTTGTTACTCAGATTAATGAGACCTTCAGTCGCAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTCTCGTTGGATGAGCATGGCATGGACTTCGATAAATTTGGAATTCTTATAAAAGTAAAGTTCAGACAATCAGGACTGCTTCAGGTTCTCAGTGCTCACCATCAGTCTGGCGGGGAACGCTCAGTTTCAACAATTCTTTATCTTGTATCTCTTCAAGACCTTACCAAATGCCCGTTTAGGGTGGTTGATGAGATAAATCAAGGAATGGATCCAATTAATGAAAGGAAGATGTTCCAGCAGTTGGTGAGAGCTGCTAGCCAACCAAATACACCACAGTGTTTTTTATTGACCCCAAAGTTACTACCAGATTTAGTATATAGTGAAGCTTGCAGTATCTTGAATATCATGAACGGTCCCTGGATTGAGCATCCCTCCAAAGTGTGGAGTAGTGGAGACTGCTGGGCAACGGTCACGGGGTTGGTTGGAGAAAGTAAATCTTGA 2817 39.47 MTILYFYFTSLFFFLHKNYLFSLLFFLLLFGRGLQFLPQDRVCEFAKLTPVQLLEETEKAIGDTQLPGQHRALVEKSREIKNIERAVEKNGDTLNQLKALNAELEKDVERVRQREILLAKAESMKKKLPWLKYDIKKVEYIELKDKENDAKKKLDEAATTLNGLKEPIEKHKKEKAVVDAKSKKISNIMNNNTRKRIELLDNENHLGVEVQGKYKEMGDLRKQEESRQQRIIQAKEELVAAELELQNLRPYCVPREDIERLASQIMDLELSANQKRLSKTESEKVLAQKRIALRQCLDRLKDMESKHTKLLQALENSGADKISDAYHWLQEHRHDFNKEVYGPILLEVNVSNQIHADYLESQTPYYIWKSFVTQDSNDRDLLVKSFKSFDVPILNYVDDEGRRKEKFEITEEMRKLGIYSRLDQVFDAPNSVKEVLISQFGLDRSYIGSKETDQKADAVSKYGILDFWTPENHYHWSVSRYGDHMTGNVEPVERSRLLLCNKDVGEIDGLRSRKSELEESVAALEESHKSFQIEIRNIENETAKLRKQREDIISIVHQEKRKRREMENRINQRKKKLESMTQEEDLETCIAKLNDQAAGISIQRFRCAIEIKNLLVDTVSHRRSFAQHHLSSIEFDAKIRDMEFNMKKQEKDAMQASLHLENCKKEVEDCRQQLSVAKRHAESIAVITPELKKDFLEMPTTIEELETAIQDNISQANSILFLNHNILEEYEHRQSQIRSIATKLETDQEELKRRVTEVDDLKKNWLPTLRNLVTQINETFSRNFQEMAVAGEVSLDEHGMDFDKFGILIKVKFRQSGLLQVLSAHHQSGGERSVSTILYLVSLQDLTKCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLVYSEACSILNIMNGPWIEHPSKVWSSGDCWATVTGLVGESKS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2428464 2445641 + Bma027208.1 Bma08g00203 87030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00203 938 Coils Coil 83 114 - -
Bma08g00203 938 CDD ABC_SMC5_euk 811 913 - -
Bma08g00203 938 Gene3D - 732 910 IPR027417 -
Bma08g00203 938 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 35 935 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bma08g00203 938 Coils Coil 646 680 - -
Bma08g00203 938 Coils Coil 140 160 - -
Bma08g00203 938 Coils Coil 744 764 - -
Bma08g00203 938 Coils Coil 507 548 - -
Bma08g00203 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 889 IPR027417 -
Bma08g00203 938 Coils Coil 556 583 - -
Bma08g00203 938 Coils Coil 286 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00203 K22803 SMC5; structural maintenance of chromosomes protein 5 - vvi:100249983 1332.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00203 Bma-Chr8:2428464 Bma10g01137 Bma-Chr10:38470123 3.72E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00203 . 35 929 Structural Maintenance of Chromosomes family AT5G15920 64.8 0.0e+00 1120.9
Bma10g01137 . 16 1055 Structural Maintenance of Chromosomes family AT5G07660 61.3 0.0e+00 1211.1
Bma10g01137 . 13 1055 Structural Maintenance of Chromosomes family AT5G61460 64.3 0.0e+00 1274.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00203 Bma_Chr08 FPKM 1.377029 1.124132 15.75836 18.562263 153.771698 125.932976 140.993683 6.178222 5.108488 5.484015