Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00212 ATGGGATTCCCTTGCCGTTTGCCTCAGAGGTATATCCCGACTAAACGCTCTTCTCACTACATCAAAGGAGTAATTATTGGTGCATTGTCGACAACCGGTTTCGCTCTGGTCATGCTTGTCGTCTTCTTATCGATTCGATTGCTATTTTACTTAAAAACAGGTACGAAACTTATTACTTTCCATGGTGATCTACCATACCCATCGTGCGAAATCATCGACAAATTGGAAGCGCTTGATGAAGAAGATGTTGTCGGGTCGGGAGGTTTTGGCACCGTTTATCGGATGGTGATGAACGATTGTGGAACGTTTGCCGTTAAACGGATTGACCGGAGCAAAGAAGGTTCAGAATCAATGTTCGAAAGGGAGCTCGAGATCTTAGGAAGCATCAATCACATAAATTTGGTGAACCTACGTGGATACTGCAAGCTTCCCGCGTCAAAACTTCTCATCTACGACTATCTAGCCATGGGAAGCTTGGACGATTTCTTACATGAATATGAAGGTGAGGAAAAATCTTTGAATTGGAGCGATCGATTACAAAATCTCTTGGCTCGGCTCGAGGGTCATGTATCGGATTTTGGCCTTGCCAAGCTGTTGGTTGACGAGGATTCACATGTCACGACGGTTAGTCTGTTACTTGAGCTTGTCACCGGGAAGAGGCCCGACCGATCCGTCTTTCGTAAAAGAGGATTGAATGTCGTTGGCTTGGGTAAGAGATTTTCTTCACAAATCTCGATAATTTCTCAAATTTGTTTTCCACCCTTCTATCTCGTTCCAAACTGA 783 44.32 MGFPCRLPQRYIPTKRSSHYIKGVIIGALSTTGFALVMLVVFLSIRLLFYLKTGTKLITFHGDLPYPSCEIIDKLEALDEEDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSKEGSESMFERELEILGSINHINLVNLRGYCKLPASKLLIYDYLAMGSLDDFLHEYEGEEKSLNWSDRLQNLLARLEGHVSDFGLAKLLVDEDSHVTTVSLLLELVTGKRPDRSVFRKRGLNVVGLGKRFSSQISIISQICFPPFYLVPN 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2621428 2622753 - Bma027221.1 Bma08g00212 87039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00212 260 PANTHER RECEPTOR-LIKE PROTEIN 55 13 183 - -
Bma08g00212 260 PANTHER LRR RECEPTOR-LIKE KINASE 13 183 - -
Bma08g00212 260 PANTHER LRR RECEPTOR-LIKE KINASE 185 209 - -
Bma08g00212 260 ProSiteProfiles Protein kinase domain profile. 78 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00212 260 PANTHER RECEPTOR-LIKE PROTEIN 55 185 209 - -
Bma08g00212 260 Pfam Protein tyrosine and serine/threonine kinase 81 178 IPR001245 GO:0004672|GO:0006468
Bma08g00212 260 Gene3D Transferase(Phosphotransferase) domain 1 55 206 - -
Bma08g00212 260 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Bma08g00212 260 SUPERFAMILY Protein kinase-like (PK-like) 59 224 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00212 - - - tcc:18604589 310.071
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00212 Bma-Chr8:2621428 Bma05g00895 Bma-Chr5:46755243 7.76E-54 dispersed
Bma08g00212 Bma-Chr8:2621428 Bma12g00624 Bma-Chr12:27486608 1.61E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g494 . . . Bda15g00592 . . . . . Cmo18g00100 Cma10g00179 Cma11g00165 Car10g00167 Car11g00135 . . Cpe04g01517 Bhi02g00353 . . . . . . Cla06g01608 . . . . . . . . Cone13ag0089 Cone19ag0092 Lsi02g00318 Csa01g00795 Chy12g01321 Cme12g01746 Blo13g00023 . . . . . . Bma08g00212 . Cmo10g00196 Cmo11g00145 . Cma18g00130 . Car18g00121 Cpe09g01063 . Bhi08g01420 . . . . . . Cla01g01420 . . . . . . Lsi06g01488 Csa01g00213 Chy02g02519 Cme02g01906
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002646 1 2 0 1 0 0 3 0 0 2 1 1 3 2 0 3 1 0 2 1 2 0 0 0 0 2 0 0 0 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66654 PF07714 PK_Tyr_Ser-Thr 1.70E-13 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00212 Bma_Chr08 FPKM 0.398646 0.23663 0.015283 0.0 0.25574 0.17297 0.237424 0.174145 0.25518 0.266909