Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00213 ATGGAAATGAAAGCGAGGGAGGATAAGAAGTGTCTTAAGAGGAGCAGAGAAGAGAAAAGTAGTAGTTCTAAAACGCTGTCAAGAACTACTATTTCTCAGTATTTTTACATGCCTATAACTCAAGCGGCGAAAGAGCTAAACGTGGGTTTAACTCTTCTGAAGAAAAGATGCAGAGAATTAGGTATCCGCAGATGGCCGCACAGGAAGTTGATGAGTCTCCAAACCCTAATCAAGAACGTTCAGGAATTGAGCAAGGATGATGGGGATGAAACAGAAGCAAAGTTAAGGGATGCAGTAGAATTACTGAAGAGAGAGAGGACGATGATGGAAGAAATGCCAGATTTGCAGCTGGAAGACAACACAAAGAGGCTCAGACAGGCTTGTTTCAAGGCCAACTACAAGAAGAGGAAGATAATGGGTATGGTGGAATCACAGTCGTCTCCATCAACCGGCAACTTGGATAGCATTGAAGAAGTGGAATTCGAAGAGGATGAAGAAATGAAATCTCTCTTGTCTCAGTGCTCCTTCTCGTCTTCTTCTAGCTTTATCTTTTAG 555 42.52 MEMKAREDKKCLKRSREEKSSSSKTLSRTTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELSKDDGDETEAKLRDAVELLKRERTMMEEMPDLQLEDNTKRLRQACFKANYKKRKIMGMVESQSSPSTGNLDSIEEVEFEEDEEMKSLLSQCSFSSSSSFIF 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2640902 2641593 - Bma027222.1 Bma08g00213 87040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00213 184 MobiDBLite consensus disorder prediction 1 25 - -
Bma08g00213 184 PANTHER PROTEIN RKD1-RELATED 6 148 - -
Bma08g00213 184 MobiDBLite consensus disorder prediction 1 23 - -
Bma08g00213 184 Pfam RWP-RK domain 26 73 IPR003035 -
Bma08g00213 184 ProSiteProfiles RWP-RK domain profile. 7 93 IPR003035 -
Bma08g00213 184 PANTHER PROTEIN RKD4 6 148 IPR044607 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00213 Bma-Chr8:2640902 Bma08g00389 Bma-Chr8:9461394 2.55E-32 dispersed
Bma08g00213 Bma-Chr8:2640902 Bma08g00220 Bma-Chr8:2738950 3.19E-133 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57718 PF02042 RWP-RK 1.30E-21 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00213 - - qlo:115964427 223.402