Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00213 | ATGGAAATGAAAGCGAGGGAGGATAAGAAGTGTCTTAAGAGGAGCAGAGAAGAGAAAAGTAGTAGTTCTAAAACGCTGTCAAGAACTACTATTTCTCAGTATTTTTACATGCCTATAACTCAAGCGGCGAAAGAGCTAAACGTGGGTTTAACTCTTCTGAAGAAAAGATGCAGAGAATTAGGTATCCGCAGATGGCCGCACAGGAAGTTGATGAGTCTCCAAACCCTAATCAAGAACGTTCAGGAATTGAGCAAGGATGATGGGGATGAAACAGAAGCAAAGTTAAGGGATGCAGTAGAATTACTGAAGAGAGAGAGGACGATGATGGAAGAAATGCCAGATTTGCAGCTGGAAGACAACACAAAGAGGCTCAGACAGGCTTGTTTCAAGGCCAACTACAAGAAGAGGAAGATAATGGGTATGGTGGAATCACAGTCGTCTCCATCAACCGGCAACTTGGATAGCATTGAAGAAGTGGAATTCGAAGAGGATGAAGAAATGAAATCTCTCTTGTCTCAGTGCTCCTTCTCGTCTTCTTCTAGCTTTATCTTTTAG | 555 | 42.52 | MEMKAREDKKCLKRSREEKSSSSKTLSRTTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELSKDDGDETEAKLRDAVELLKRERTMMEEMPDLQLEDNTKRLRQACFKANYKKRKIMGMVESQSSPSTGNLDSIEEVEFEEDEEMKSLLSQCSFSSSSSFIF | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2640902 | 2641593 | - | Bma027222.1 | Bma08g00213 | 87040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00213 | 184 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bma08g00213 | 184 | PANTHER | PROTEIN RKD1-RELATED | 6 | 148 | - | - | |
Bma08g00213 | 184 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bma08g00213 | 184 | Pfam | RWP-RK domain | 26 | 73 | IPR003035 | - | |
Bma08g00213 | 184 | ProSiteProfiles | RWP-RK domain profile. | 7 | 93 | IPR003035 | - | |
Bma08g00213 | 184 | PANTHER | PROTEIN RKD4 | 6 | 148 | IPR044607 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00213 | Bma-Chr8:2640902 | Bma08g00389 | Bma-Chr8:9461394 | 2.55E-32 | dispersed | |
Bma08g00213 | Bma-Chr8:2640902 | Bma08g00220 | Bma-Chr8:2738950 | 3.19E-133 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57718 | PF02042 | RWP-RK | 1.30E-21 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00213 | - | - | qlo:115964427 | 223.402 |