Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00216 ATGGAAGGAGGAGATGAGCTCCACCACCACCACCGCCATCTCCACCACCACAACCGCCCAACCTTCCCCTTTCAATTACTAGAAAAGAAAGACGACGAAGCTTCCTGCTCCAGCTCCGGATACCCTTCTCTTGCCATTTCCGCAGATCCACCCACCTCTACCTCCCGTTTACAGGCCACCCCCTCCACGTCGGCAGAGCCGTCCAAGAAGCCTCCGCCCAAACGTACATCGACGAAGGACCGCCACACCAAGGTTGACGGCCGTGGCCGCCGCATCAGAATGCCTGCTCTTTGCGCAGCGAGGGTTTTCCAGCTAACCCGCGAGCTGGGCCACAAGTCCGACGGAGAGACCATCGAGTGGCTCCTCCAACAGGCGGAGCCAGCAGTGATCGCCGCAACCGGCACTGGAACAATACCGGCGAACTTCACTTCACTTAATATATCATTAAGAAGCTCCGGCTCAAGCATGTCCGTTCCATCTCAGCTTAGATCATCTTCCTACTATAATCCGAACTTTAGAAGTCTTTTTCCGGGTATAGGTTTGTCGCCGGAAAATACATCCACGTTATTAAATTTTCAGTCCAATAGTATGGGTTCTATGCTGCAAGCAAAGCAAGAACTGAGAGATACTTCACTGGAGGTATCTGAGGGGGATGAAGGCATAGGCCGGAAAAGAAGATCGGAGCAAGATTTGTCATCTCAACATCAAATGGGAAGCTATTTATTGCAATCAAGTGCCGGAGCAATTCCGGCTACACATGGGGCTCAAATTCCAGCCAATTTTTGGATGCTTACTAATACAAATAACCAAGTCATGGGTGGCGACCCAATTTGGACATTTCCTTCCGTTAGTAATAGCGCTTTGTACAGGGGGACCATGTCTAGTGGGTTACATTTCATGAATTTTCCAGCCCCCATGACCTTATTGCCTGGTCAACAATTAGGGCCGGTCATTGGGATTGGCAGCGGCGGAAGCAGTGGTGCTAGTGACGGACATTTAAATATGTTGACGGGGCTGAACCCGTATCGATCCATGCAAAATTCGAGCGTGTTGGAATCTCCCGGTACTGGTTCCCACTCACACCATGGTGGTGGTGGCGGCAGCGACAGAGGCGACGATGGACATGACTCAACAACCAACAATTAG 1146 51.31 MEGGDELHHHHRHLHHHNRPTFPFQLLEKKDDEASCSSSGYPSLAISADPPTSTSRLQATPSTSAEPSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSSYYNPNFRSLFPGIGLSPENTSTLLNFQSNSMGSMLQAKQELRDTSLEVSEGDEGIGRKRRSEQDLSSQHQMGSYLLQSSAGAIPATHGAQIPANFWMLTNTNNQVMGGDPIWTFPSVSNSALYRGTMSSGLHFMNFPAPMTLLPGQQLGPVIGIGSGGSSGASDGHLNMLTGLNPYRSMQNSSVLESPGTGSHSHHGGGGGSDRGDDGHDSTTNN 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2682222 2683386 - Bma027226.1 Bma08g00216 87043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00216 381 ProSiteProfiles TCP domain profile. 78 132 IPR017887 -
Bma08g00216 381 MobiDBLite consensus disorder prediction 209 231 - -
Bma08g00216 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 378 IPR005333 GO:0003700
Bma08g00216 381 MobiDBLite consensus disorder prediction 345 381 - -
Bma08g00216 381 Pfam TCP family transcription factor 76 236 IPR017887 -
Bma08g00216 381 MobiDBLite consensus disorder prediction 72 90 - -
Bma08g00216 381 MobiDBLite consensus disorder prediction 365 381 - -
Bma08g00216 381 MobiDBLite consensus disorder prediction 31 90 - -
Bma08g00216 381 MobiDBLite consensus disorder prediction 36 71 - -
Bma08g00216 381 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 13 378 - -
Bma08g00216 381 MobiDBLite consensus disorder prediction 209 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00216 - - - csv:101221049 495.352
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00216 Bma12g00998 CCT
Bma08g00216 Bma12g00998 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00216 Bma-Chr8:2682222 Bma14g01851 Bma-Chr14:39881354 3.31E-46 dispersed
Bma06g00680 Bma-Chr6:36519399 Bma08g00216 Bma-Chr8:2682222 1.72E-96 transposed
Bma12g00991 Bma-Chr12:41986190 Bma08g00216 Bma-Chr8:2682222 1.26E-137 wgd
Bma12g00998 Bma-Chr12:42072358 Bma08g00216 Bma-Chr8:2682222 1.26E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57720 PF03634 TCP 2.40E-40 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00216 Bma_Chr08 FPKM 9.150651 10.956429 9.743488 9.251598 13.903724 16.011816 14.362392 8.841899 7.335362 6.47396