Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00220 ATGAATCATTTCCTGATTTTTTTTTTATATTTTGCAGATGACTTTTCATATGATTATGGAGAAGTGGGAGGGAATTGGAGCGCAATCAATGAAGAATTAGGGTTTCAAGAAAAGCTTATATTCGGCGAAAATGGAGGAATGGAAATGAAAGCGAGGGAGGATAAGAAGTGTCTTAAGAGGAGCAGAGAAGAGAAAAGTAGTAGTTCTAAAACGCTGTCAAGAACTACTATTTCTCAGTATTTTTACATGCCTATAACTCAAGCGGCGAAAGAGCTAAACGTGGGTTTAACTCTTCTGAAGAAAAGATGCAGAGAATTAGGTATCCGCAGATGGCCTCACAGAAAGTTGATGAGTCTCCAAACCCTAATCAAGAACGTTCAGGAATTGAGCAAGGATGATGGGGATGAAACAGAAGCCAAGCTAAGGGACGCAGTAGAATTACTGAAGAGAGAGAGGACGATGATGGAAGAAATGCCAGATTTGCAGCTGGAAGACAACACAAAGAGGCTCAGACAGGCTTGTTTCAAGGCCAACTACAAGAAGAGGAAGATAATGGGTATGGTGGAATCACAGTCGTCTCCATCAACCGGCAACTTGGATAGCATTGAAGAAGTGGAATTCGAAGAGGATGAAGAAATGAAATCTCTCTTGTCTCAGTGCTCCTTCTCGTCTTCTTCTAGCTTTATCTTTTAG 693 40.98 MNHFLIFFLYFADDFSYDYGEVGGNWSAINEELGFQEKLIFGENGGMEMKAREDKKCLKRSREEKSSSSKTLSRTTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELSKDDGDETEAKLRDAVELLKRERTMMEEMPDLQLEDNTKRLRQACFKANYKKRKIMGMVESQSSPSTGNLDSIEEVEFEEDEEMKSLLSQCSFSSSSSFIF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2738950 2739729 + Bma027231.1 Bma08g00220 87047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00220 230 Pfam RWP-RK domain 72 119 IPR003035 -
Bma08g00220 230 PANTHER PROTEIN RKD1-RELATED 50 194 - -
Bma08g00220 230 PANTHER PROTEIN RKD4 50 194 IPR044607 GO:0003700
Bma08g00220 230 MobiDBLite consensus disorder prediction 52 69 - -
Bma08g00220 230 ProSiteProfiles RWP-RK domain profile. 53 139 IPR003035 -
Bma08g00220 230 MobiDBLite consensus disorder prediction 52 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00220 - - - qlo:115964427 227.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00220 Bma-Chr8:2738950 Bma08g00389 Bma-Chr8:9461394 5.52E-32 dispersed
Bma08g00213 Bma-Chr8:2640902 Bma08g00220 Bma-Chr8:2738950 3.19E-133 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00213 . 13 152 AtRKD Transcription Factor Family AT1G18790 65.0 6.5e-42 167.9
Bma08g00220 . 59 198 AtRKD Transcription Factor Family AT1G18790 65.0 6.5e-42 167.9
Bma08g00213 . 20 178 AtRKD Transcription Factor Family AT1G74480 59.0 2.0e-44 176.4
Bma08g00220 . 66 224 AtRKD Transcription Factor Family AT1G74480 59.0 2.0e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57723 PF02042 RWP-RK 1.90E-21 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00220 Bma_Chr08 FPKM 7.865014 9.468605 3.944673 4.62591 31.950666 25.929283 31.554022 5.453937 3.650218 4.645048