Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00220 ATGAATCATTTCCTGATTTTTTTTTTATATTTTGCAGATGACTTTTCATATGATTATGGAGAAGTGGGAGGGAATTGGAGCGCAATCAATGAAGAATTAGGGTTTCAAGAAAAGCTTATATTCGGCGAAAATGGAGGAATGGAAATGAAAGCGAGGGAGGATAAGAAGTGTCTTAAGAGGAGCAGAGAAGAGAAAAGTAGTAGTTCTAAAACGCTGTCAAGAACTACTATTTCTCAGTATTTTTACATGCCTATAACTCAAGCGGCGAAAGAGCTAAACGTGGGTTTAACTCTTCTGAAGAAAAGATGCAGAGAATTAGGTATCCGCAGATGGCCTCACAGAAAGTTGATGAGTCTCCAAACCCTAATCAAGAACGTTCAGGAATTGAGCAAGGATGATGGGGATGAAACAGAAGCCAAGCTAAGGGACGCAGTAGAATTACTGAAGAGAGAGAGGACGATGATGGAAGAAATGCCAGATTTGCAGCTGGAAGACAACACAAAGAGGCTCAGACAGGCTTGTTTCAAGGCCAACTACAAGAAGAGGAAGATAATGGGTATGGTGGAATCACAGTCGTCTCCATCAACCGGCAACTTGGATAGCATTGAAGAAGTGGAATTCGAAGAGGATGAAGAAATGAAATCTCTCTTGTCTCAGTGCTCCTTCTCGTCTTCTTCTAGCTTTATCTTTTAG 693 40.98 MNHFLIFFLYFADDFSYDYGEVGGNWSAINEELGFQEKLIFGENGGMEMKAREDKKCLKRSREEKSSSSKTLSRTTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELSKDDGDETEAKLRDAVELLKRERTMMEEMPDLQLEDNTKRLRQACFKANYKKRKIMGMVESQSSPSTGNLDSIEEVEFEEDEEMKSLLSQCSFSSSSSFIF 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2738950 2739729 + Bma027231.1 Bma08g00220 87047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00220 230 Pfam RWP-RK domain 72 119 IPR003035 -
Bma08g00220 230 PANTHER PROTEIN RKD1-RELATED 50 194 - -
Bma08g00220 230 PANTHER PROTEIN RKD4 50 194 IPR044607 GO:0003700
Bma08g00220 230 MobiDBLite consensus disorder prediction 52 69 - -
Bma08g00220 230 ProSiteProfiles RWP-RK domain profile. 53 139 IPR003035 -
Bma08g00220 230 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00220 Bma-Chr8:2738950 Bma08g00389 Bma-Chr8:9461394 5.52E-32 dispersed
Bma08g00213 Bma-Chr8:2640902 Bma08g00220 Bma-Chr8:2738950 3.19E-133 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57723 PF02042 RWP-RK 1.90E-21 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00220 - - qlo:115964427 227.254