Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00221 ATGATTAGAGCATACTCTACGAGCAATGTTCCAATAGAGGGGTTTTATATGTACCGGAATATGGCAAGTAAAGGAGTTAGTGCCGACGCATTTTCGTCATCCTTCGCTGTTAAATCTTGTATCAAATTTTTTTATCTGGAAGGAGGAGTTCAGATTCATGCGAAGATCTTTAGAAATGGGGATGAGGCAGATGTGTTATTGCTTACTACTTTGATGGATTTGTATTCATCTTGCGACAAATACAAAGAAGCATGCAAGATGTTCGATGAAATGCCTCAAAGAGACGTTGTCGTTTGGAATGTATTGATTTCATGTTGTATACGTAATAATCGGACCCGAGATGCCTTAAGCTTATTTGAGATTATGCAGAGTCCAAATTATCAATGTCAACCAGATGGCGTCACTTGCTTACATCTTCTCCAAGCTTGTTCATCCCTGAATGCGTTGGAATTTGGCGAAAAAGTTCATCGTTTTATCGAAGATCATGGATATGGAGAAGCTGCCAATTTGTGTAATTCGCTTATAGCCATGTATTCTCGGTGTGGGTCTCTGGATAAGGCGAATGAAGTATTCAAGAAAATGAAAAACAATAATGTAATTTCATGGAGTGCAATGATCTCTGGTTTAGCCATGAACGGCCATGGGAGAGAAGCTATCCAAGGATTTGAAGAGATGCAGAAATTGGGAGTCCAAGTTGATGCACAAACATTAACTGGAGTTCTTTCTGCTTGTAGTCATTGCGGGTTGGTCGAAGAAGGAATGGCGATTTTCAATCTCATGAATAAAAAATATGGAATTTTGCCAAATATTCATCACTATGGATGTGTGGTTGATCTCCTCGGTCGGGCCGGCCTGCTCGATCAAGCCTATGGCCTTATAACGACAATGGAGGTCAAACCAGATGCCACCATTTGGAGAACCCTTCTCGGGGCTTGCCGAATTTACAAGCACGAAGGCCTTGCAGAGCTTGTCATCGGACATTTGATCGAAATTAAAGCTCAAGAAGCAGGGGATTATGTTTTGTTGTTGAACATTTACTCTTCAGCAGAAAACTGGGAAAAAGTGGCAGAAATTAGGAAGTTCATGAAGGAGAGAGGCATCCATACATCATCCGGGTGTAGCACGATAGAATTGAGAGGAGTCGTTCATGAGTTCATCGCAGATGACGTTTCACATCCCAAGAAAGATGAGATCTACGAGAAGCTCGACGAGATCAATAATCAGCTGAAAATCGGCGGGTATGTTGCAGAAATTTCGTCGGAGTTGCACAAGTTGAATTCAGAAGAAAAAGGAAATTCTCTATCTTATCATAGCGAAAAGTTGGCAATTGCATTCGGTGTTCTTGCTACCCCACCCGGCAAAACGATTCGGGTGGCGAAGAATCTTCGCACTTGTGTCGATTGCCACAATTTCACCAAAGCTCTCTCCAGCGTTTACAGCCGAGAAGTCATCATTCGAGACCGGAATCGATTCCATCACTTCCGAGAGGGTCGATGTTCGTGCAATGACTACTGGTAG 1518 42.42 MIRAYSTSNVPIEGFYMYRNMASKGVSADAFSSSFAVKSCIKFFYLEGGVQIHAKIFRNGDEADVLLLTTLMDLYSSCDKYKEACKMFDEMPQRDVVVWNVLISCCIRNNRTRDALSLFEIMQSPNYQCQPDGVTCLHLLQACSSLNALEFGEKVHRFIEDHGYGEAANLCNSLIAMYSRCGSLDKANEVFKKMKNNNVISWSAMISGLAMNGHGREAIQGFEEMQKLGVQVDAQTLTGVLSACSHCGLVEEGMAIFNLMNKKYGILPNIHHYGCVVDLLGRAGLLDQAYGLITTMEVKPDATIWRTLLGACRIYKHEGLAELVIGHLIEIKAQEAGDYVLLLNIYSSAENWEKVAEIRKFMKERGIHTSSGCSTIELRGVVHEFIADDVSHPKKDEIYEKLDEINNQLKIGGYVAEISSELHKLNSEEKGNSLSYHSEKLAIAFGVLATPPGKTIRVAKNLRTCVDCHNFTKALSSVYSREVIIRDRNRFHHFREGRCSCNDYW 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2768687 2770204 + Bma031429 Bma08g00221 87048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00221 505 Pfam E motif 319 377 IPR046848 -
Bma08g00221 505 TIGRFAM PPR: pentatricopeptide repeat domain 170 199 IPR002885 -
Bma08g00221 505 TIGRFAM PPR: pentatricopeptide repeat domain 69 97 IPR002885 -
Bma08g00221 505 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Bma08g00221 505 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Bma08g00221 505 TIGRFAM PPR: pentatricopeptide repeat domain 97 124 IPR002885 -
Bma08g00221 505 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 491 - -
Bma08g00221 505 Pfam DYW family of nucleic acid deaminases 413 505 IPR032867 GO:0008270
Bma08g00221 505 Pfam E+ motif 382 405 IPR046849 -
Bma08g00221 505 Pfam PPR repeat family 198 245 IPR002885 -
Bma08g00221 505 Pfam PPR repeat family 94 143 IPR002885 -
Bma08g00221 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 197 IPR002885 -
Bma08g00221 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Bma08g00221 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Bma08g00221 505 PANTHER BNAA06G20590D PROTEIN 1 491 - -
Bma08g00221 505 Gene3D Tetratricopeptide repeat domain 213 388 IPR011990 GO:0005515
Bma08g00221 505 Gene3D Tetratricopeptide repeat domain 1 164 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00221 - - - jre:109004001 766.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00221 Bma-Chr8:2768687 Bma14g00833 Bma-Chr14:9313621 2.25E-06 dispersed
Bma08g00221 Bma-Chr8:2768687 Bma15g00171 Bma-Chr15:1823277 1.53E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006872 1 7 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 2 1 1 0 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00221 Bma_Chr08 FPKM 1.603175 1.458798 4.50379 5.082841 1.646861 0.640314 1.685675 15.420379 21.508778 22.629841