Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00222 ATGGCGGCAAACTCCGCAGCTATGATTACCATCACCACTACTGCCTCCCTTGGCACCAAAGTGCACTCATTTCCACAGTCGAAGCTGTCGAGTTCAAGGCTTAGCGCACAAAACTCTCTTAAGAGCTTCTCCGGCCTCAAGGCTGCAACATTTGATAGGTATGAATCAGATTCATCATTCGTAGGAAAAGCAAGTAGTGCAATTTTGCATTCATTTGCTCGAGAAGCTTCCAAAAAAAACCAAGAATTGCTGTATCGCCTTCAACCACTGGCATATGCATCGTACAAAGTGGCGGTGCTCGGAGCAGCTGGCGGAATTGGCCAGCCTCTGTCGCTTCTTATCAAAATGTCTCCTTTAGTTTCGACCCTTCACCTTTACGATATAGCAAATGTCAAAGGAGTTGCTGCTGATCTTAGCCACTGCAATACTCCATCCCAAGTTTTGGATTTCACTGGCGATTCTCAGTTGGCCGACGCTTTGAAAGGTGTAAATGTGGTCGTCATCCCTGCAGGGGTCCCACGTAAGCCTGGGATGACCCGTGATGATCTTTTCAACATAAATGCCGGCATTGTGAAGAATTTGATCGAGGCTGTAGCTGATAATTGCCCCGATGCCTTCATCCACATCATTAGCAATCCGGTGAACTCAACGGTGCCGATTGCAGCGGAAGTTCTGAAACGGAAGGGCGTCTATGATTCAAAAAAGCTGTTTGGTCTTACAACCTTGGATGTTGTGAGAGCAAACACATTTGTCGCCCAGAAAAAGAACCTTAAATTGATAGATGTCGATGTTCCGGTCGTCGGAGGACATGCTGGAATAACGATTCTTCCTCTGCTTTCAAAGACAAAGCCTTCGGTCAATTTTTCAGATGAAGAGATTTCTGAATTAACGGTCAGGATTCAAAATGCTGGGACAGAGGTCGTGGAGGCTAAAGCTGGTGCAGGGTCGGCCACTCTGTCGATGGCGTATGCAGCTGCAAGATTTGTCGAGTCATCTCTTCGAGCTCTCGATGGAGACAGTGATGTCTATGAGTGTGCTTATGTTCAGTCAGATCTCACCGAGCTTCCATTTTTTGCATCGAGGGTTAAGATCGGAAGAAAAGGAATCGAAGCTTTTGTCCCGTCCGATCTTCAGGGATTGACAGATTACGAACAGAAGGCTCTGGAGGCCCTGAAGCCGGAATTGAAGGCTAGCATTGAGAAGGGAATAGCTTTTACCCAGAAGTGA 1227 47.03 MAANSAAMITITTTASLGTKVHSFPQSKLSSSRLSAQNSLKSFSGLKAATFDRYESDSSFVGKASSAILHSFAREASKKNQELLYRLQPLAYASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVLDFTGDSQLADALKGVNVVVIPAGVPRKPGMTRDDLFNINAGIVKNLIEAVADNCPDAFIHIISNPVNSTVPIAAEVLKRKGVYDSKKLFGLTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTKPSVNFSDEEISELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECAYVQSDLTELPFFASRVKIGRKGIEAFVPSDLQGLTDYEQKALEALKPELKASIEKGIAFTQK 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2770457 2771683 - Bma027232.1 Bma08g00222 87049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00222 408 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 240 405 IPR022383 GO:0016616
Bma08g00222 408 Pfam lactate/malate dehydrogenase, NAD binding domain 96 238 IPR001236 GO:0016491
Bma08g00222 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 238 IPR036291 -
Bma08g00222 408 ProSitePatterns Malate dehydrogenase active site signature. 239 251 IPR001252 GO:0006108|GO:0016615
Bma08g00222 408 Gene3D - 93 239 - -
Bma08g00222 408 SUPERFAMILY LDH C-terminal domain-like 240 406 IPR015955 GO:0003824|GO:0016616
Bma08g00222 408 PANTHER MALATE AND LACTATE DEHYDROGENASE 26 408 - -
Bma08g00222 408 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 26 408 - -
Bma08g00222 408 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 96 407 IPR010097 GO:0006099|GO:0030060
Bma08g00222 408 Gene3D - 240 408 IPR015955 GO:0003824|GO:0016616
Bma08g00222 408 CDD MDH_glyoxysomal_mitochondrial 95 405 IPR010097 GO:0006099|GO:0030060
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00222 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - zju:107419247 637.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00222 Bma12g00996 CCT
Bma08g00222 Bma12g00996 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00222 Bma-Chr8:2770457 Bma10g00478 Bma-Chr10:5500083 1.96E-147 dispersed
Bma12g00989 Bma-Chr12:41937932 Bma08g00222 Bma-Chr8:2770457 0 wgd
Bma12g00996 Bma-Chr12:42032798 Bma08g00222 Bma-Chr8:2770457 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g558 . . Bda06g00544 . Bpe12g00545 . . Bma12g00996 . . Cma10g00192 Cma11g00142 Car10g00183 Car11g00152 . . . Bhi02g00315 Tan09g2120 . . Hepe09g0117 . . Cla06g01590 Cam06g1762 Cec06g1815 Cco06g1821 Clacu06g1725 Cmu06g1669 Cre06g2485 . . . . . . . . Blo13g00007 Blo15g00310 . . Bpe07g00781 . . Bma08g00222 . . Cmo11g00167 . . . . . . . . . . . . . . . . . . . . Lsi06g01462 Csa01g00236 Chy02g02496 Cme02g01883
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003196 1 4 2 3 2 1 2 2 1 4 1 1 1 3 2 1 1 2 0 2 3 1 1 1 0 0 1 4 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00222 Bma_Chr08 FPKM 10.759615 10.484789 22.036524 23.470688 5.010492 7.304424 6.486531 65.137848 68.226509 58.1469