Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00223 ATGAAGTCCTGGGTTTCTCTCTGCGTGATCGTGTTGATAGTCGCCGTCAATGGCTGCCACTGCAAAGTAGTGCAGTTCATATTTGGAGACTCTCTCTCTGACGTCGGAAACAACAAGTATTTTTCAAGGAGTCTTGCTCAGGCGAGCCTGCCTTGGTATGGGATTGATTTTGGCAATGGATTGCCCAACGGGAGGTTCACTAATGGCCGAACCGTAGCTGACATAATTGGTGATAATCTGGGTCTTCCTAGACCACCTGCTTTCATGGATCCATCTTTAACTGAAGATATGATTCTGGAAAATGGAGTAAATTATGCTTCTGGAGGTGGAGGAATCTTGAATGAAACTGGAGGCTATTTTATTCAACGGCTCTCTCTATCCAAGCAAATTGAGTTGTTTCAAGGAACACAGGAGTTGATAAAAGGAAAAATAGGCAAAGTTGAAGCAGAGAAATTCTTCCAAAGTGGTCGATATGTGGTCGCATTAGGGAGTAACGACTTCATCAATAATTACTTGTCACCTGTTTATACCGATTCTTGGACTTACAACGATCGGACTATTATCCCGTACTTAATGAACACACTCAGAGATCAACTCCAGTTGTTGCATCGGTTGGGGGTGAGGCAGCTGATGGTGTTTGGTCTGGGGCCAATGGGCTGCATACCTCTTCAAAGGGTGCTTAGTTCTTCAGGAAATTGCCAAGATAGAACAAATAAGCTGGCTCTCAGCTTTAATCAAGCTTCTGCCAAGCTTCTCGACGAATTATCCGGCAAATTCCCCAATGCAACCTACAAATTTGCCGACGCGTATGATGTGGTCGATGATGTGATTTCCAATCCAGTAAAATATGGCTTCAACAATTCGGACTCGCCGTGCTGTTCGTTCGGGAGCATTCGGCCTGCGCTTACGTGCATTCCGGCATCCGTGCTGTGCGAAGATAGAAGCAAGTATGTGTTTTGGGATGAGTACCATCCATCAGACTCAGCCAATGAGTTGATTGCTAAGGAGCTCATCAAGAAATTTGGCCTCACCAGAGTTGATCAAACCCTTTCCCCCTCTCCTGCCCCTTCCTTCCCCTCATCCCCATCCCCTTCCCCACACTAA 1104 46.01 MKSWVSLCVIVLIVAVNGCHCKVVQFIFGDSLSDVGNNKYFSRSLAQASLPWYGIDFGNGLPNGRFTNGRTVADIIGDNLGLPRPPAFMDPSLTEDMILENGVNYASGGGGILNETGGYFIQRLSLSKQIELFQGTQELIKGKIGKVEAEKFFQSGRYVVALGSNDFINNYLSPVYTDSWTYNDRTIIPYLMNTLRDQLQLLHRLGVRQLMVFGLGPMGCIPLQRVLSSSGNCQDRTNKLALSFNQASAKLLDELSGKFPNATYKFADAYDVVDDVISNPVKYGFNNSDSPCCSFGSIRPALTCIPASVLCEDRSKYVFWDEYHPSDSANELIAKELIKKFGLTRVDQTLSPSPAPSFPSSPSPSPH 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2774113 2776268 + Bma031430 Bma08g00223 87050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00223 367 MobiDBLite consensus disorder prediction 348 367 - -
Bma08g00223 367 SUPERFAMILY SGNH hydrolase 27 341 - -
Bma08g00223 367 Gene3D SGNH hydrolase 24 342 IPR036514 -
Bma08g00223 367 CDD SGNH_plant_lipase_like 26 340 IPR035669 -
Bma08g00223 367 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 5 355 - -
Bma08g00223 367 Pfam GDSL-like Lipase/Acylhydrolase 26 336 IPR001087 GO:0016788
Bma08g00223 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 5 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00223 - - - fve:101303804 582.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00223 Bma-Chr8:2774113 Bma06g01464 Bma-Chr6:51303810 7.10E-75 dispersed
Bma08g00223 Bma-Chr8:2774113 Bma04g00342 Bma-Chr4:2786968 4.62E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g560 . . . Bda15g00606 Bpe12g00544 . . . . . Cma10g00195 . Car10g00185 . Sed08g0218 . . Bhi02g00312 Tan09g2118 Cmetu06g2001 . Hepe09g0115 . . Cla06g01589 Cam06g1758 Cec06g1814 Cco06g1817 Clacu06g1724 Cmu06g1667 Cre06g2481 . . Cone13ag0068 Cone19ag0069 . . . . Blo13g00006 . . . . . . Bma08g00223 . Cmo10g00210 . . . . . . Cpe18g00790 . . . . . . . . . . . . . . Lsi06g01461 Csa01g00238 Chy02g02494 Cme02g01880
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010973 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00223 Bma_Chr08 FPKM 13.681001 15.505965 16.153839 17.86619 13.72877 10.619077 12.53249 27.217102 28.093277 28.56992