Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00227 ATGGCAACAGTCACCGTCCCCGCTCCAGTTTTCCGGCTAACTACTTCGAAAACCAGATTCTTATCCGGCTCTTCAGGTAAACTGAACCGAGAGATTTCTGTTAAATCATCCACTTCTCCGGTTACTTCTTTCAAAGTTGAGGCTAAGAAAGGAGAATGGCTGCCGGGTCTACCCTCGCCGGCTTATCTCAACGGCAGTCTTCCCGGCGACAACGGGTTTGACCCACTTGGGCTAGCTGAGGATCCAGAAAATCTCCGATGGTTCGTCCAAGCTGAGCTAGTCAATAGCCGGTGGGCGATGTTGGGTGTCGCCGGAATGTTGCTGCCGGAAGTGTTCACCAAGTTCGGAATCCTCAACGTACCCAAATGGTACGACGCCGGAAAAGCTGAATACTTCGCATCGTATTCCACTCTTTTCGTGATTGAGTTCATTCTGTTCCACTACGTCGAGATCAGAAGATGGCAAGATATTAAAAACCCAGGATGTGTGAATCAAGATCCAATTTTTAAGCAATACAGCTTACCCCCACATGAATGTGGGTATCCCGGCGGAATTTTTAACCCTCTCAACTTCGCTCCCACCGTCGAAGCCAAAGAGAAGGAGCTCGCAAATGGTAAGTCCAGAATTTTCCATCAAATCTTCTGTCTTCCGTCATCTAAAAAATTTGGAAGGCTGATTTTTGCAGGGAGATTGGCGATGTTGGCGTTTTTGGGGTTTGTGATTCAGCACAATGTGACCGGACAAGGGCCGTTCGACAACCTTTTACAGCACCTATCCGACCCATGGCACAACACCATTGTCCAAACGTTTGGTCAGTAG 819 48.35 MATVTVPAPVFRLTTSKTRFLSGSSGKLNREISVKSSTSPVTSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNSRWAMLGVAGMLLPEVFTKFGILNVPKWYDAGKAEYFASYSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGGIFNPLNFAPTVEAKEKELANGKSRIFHQIFCLPSSKKFGRLIFAGRLAMLAFLGFVIQHNVTGQGPFDNLLQHLSDPWHNTIVQTFGQ 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2793852 2794773 - Bma027236.1 Bma08g00227 87054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00227 272 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 210 270 - -
Bma08g00227 272 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 207 - -
Bma08g00227 272 Gene3D Chlorophyll a/b binding protein domain 60 263 - -
Bma08g00227 272 SUPERFAMILY Chlorophyll a-b binding protein 50 206 - -
Bma08g00227 272 Pfam Chlorophyll A-B binding protein 60 205 IPR022796 -
Bma08g00227 272 SUPERFAMILY Chlorophyll a-b binding protein 228 270 - -
Bma08g00227 272 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 210 270 IPR001344 GO:0009765|GO:0016020
Bma08g00227 272 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 207 IPR001344 GO:0009765|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00227 Bma12g00994 CCT
Bma08g00227 Bma12g00994 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01474 Bma-Chr4:50517231 Bma08g00227 Bma-Chr8:2793852 1.17E-68 dispersed
Bma08g00227 Bma-Chr8:2793852 Bma10g00275 Bma-Chr10:2490354 4.61E-70 dispersed
Bma12g00987 Bma-Chr12:41910555 Bma08g00227 Bma-Chr8:2793852 3.04E-154 wgd
Bma12g00994 Bma-Chr12:42023138 Bma08g00227 Bma-Chr8:2793852 1.98E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00227 K08910 - ini:109149734 441.81