Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00228 ATGTTTCCTCAAGGGTCTAAAAATGTCTCTGTTCCTCCTAGTTCGATAAGATACTCGCCGGACGGAGCGACGCCGTTGATTGCGCCGAATTCAGTCTACGCGACAGCTCAAGATATGCAAGACCCTGAAACTATGCTAGTGAGTTTCAATCTCACATGGAGTTTCAGCGTCGAGATGGGATACTCTTATTTGATCAGACTCCATTTTTGCGACATTGTGAGTAAGGCTCTGAACAGCCTGTACTTCAACGTGTATATCAATGGAGTAATGGGTGTGTCGAATCTCGATCTCTCGAGTCTCACTGGCTTCCTTTCCTCTGCTTATTACAAAGACCTTGTGGTGAATTCTTCCGCCATTGTTAACAGCACGATCATGGTTCAGGTCGGCCCTTCATATCTTCAATCCGGGGTCGAAAACGCCATTCTCAACGGCGTGGAGATTATGAAAATAAGCAACGACGCCAGAAGCTTGGATGGTTTGTTCACCGTCGATGAGGTTTTCATGGGGGATCGAGGGAGGAGCTGGATGAAGATCGTCGCCGCCGTCGCTCTCGGAATGGGGGTGACTGCTACGCTGTTTCTCGCCGTAGTTTTTGTTCGACGGAAAAGGAGGCCTCAAGGTTATGAGAAGAGAAACAGTTTCTCTTCATGGCTTCTTCCTCTATCTTCTTCTAGCCGTTCTTCCTTCATGTCTAGCCGGAGCAGCTCCAGAAGATCGAATAATTTCGGGTCGAGAAAGAGCAAAAATGGCTTCTCCGGCATCTACAGCAGTGTAGGCCTGGGAAGATTCTTCACTTTCAACACACTACAGAGCGCTACACAGAATTTCGACGAGAAGGCAGTGATCGGCGTTGGTGGGTTTGGAAAAGTGTACATCGGAGTGTTGGAAGACGGAACTAAACTCGCCATCAAAAGAGGAAATGCAAGCTCCGAGCAGGGCATCAACGAGTTCCGAACAGAGATCGACATGCTCTCGAAGCTCCGCCATCGTCACCTCGTATCCCTCATCGGCTTCTGCGACGAAAATTCAGAGATGATTCTCGTCTACGAATACATGGCCAACGGACCTTTACGAGACCATCTCTACGGCTCCAACCTCCCTCCATTGTCGTGGAAAAAGCGACTCGAAATCTGCATTGGAGCTGCCAGAGGTTTACACTATCTCCACACCGGCGCCGCGCAAGGAATCATCCACCGCGATGTCAAGACTACGAACATCCTCCTCGACGAGAATTTCGTCGCCAAAGTTTCCGATTTCGGCCTCTCGAAAGCCGCTCCCTCGCTTGAGCAAACCCACGTCAGCACGGCGGTTAAGGGCAGTTTCGGCTACCTCGATCCCGAATACTTCAGAAGACAACAACTGACCGACAAATCCGACGTTTATTCGTTCGGAGTCGTCCTCTTCGAAGTGTTATGCGCTCGGCTGGTCATAAATCCCGCCCTTCCGAGAGAGCAGGTGAATCTCGCCGAGTGGGCGATGAAATGTCACAAAAAGGGTTCGCTCGAAAAGATAATCGATCCCCATATTGCTTCCTCCATCAGCCATGGCTCCCTCAAAAAATTTATGGAAGCTGCAGAAAAGTGTTTGGCTGAACATGGCGTCGACAGGCCCTCCATGGGAGATGTTTTGTGGAACTTGGAATATGCTTTGCAGCTTCAAGAAGCAATCTCAGAGATTGATCATCCTCCAGAAGAGAACAGTTCTAATCTGGTCGTCTTAAACAAACCAGACGATAATGGTCGTCGAGGAGAACCGAGCGCCGCCGTGAACGATAATTCCGAAGTACTCGCTGGGTCTCCGTTGTTTTCTCAGATCGGAAGCTTCCAAGGAAGGTGA 1836 49.67 MFPQGSKNVSVPPSSIRYSPDGATPLIAPNSVYATAQDMQDPETMLVSFNLTWSFSVEMGYSYLIRLHFCDIVSKALNSLYFNVYINGVMGVSNLDLSSLTGFLSSAYYKDLVVNSSAIVNSTIMVQVGPSYLQSGVENAILNGVEIMKISNDARSLDGLFTVDEVFMGDRGRSWMKIVAAVALGMGVTATLFLAVVFVRRKRRPQGYEKRNSFSSWLLPLSSSSRSSFMSSRSSSRRSNNFGSRKSKNGFSGIYSSVGLGRFFTFNTLQSATQNFDEKAVIGVGGFGKVYIGVLEDGTKLAIKRGNASSEQGINEFRTEIDMLSKLRHRHLVSLIGFCDENSEMILVYEYMANGPLRDHLYGSNLPPLSWKKRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVSDFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARLVINPALPREQVNLAEWAMKCHKKGSLEKIIDPHIASSISHGSLKKFMEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQEAISEIDHPPEENSSNLVVLNKPDDNGRRGEPSAAVNDNSEVLAGSPLFSQIGSFQGR 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2796119 2797954 - Bma027237.1 Bma08g00228 87055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00228 611 MobiDBLite consensus disorder prediction 561 595 - -
Bma08g00228 611 SMART serkin_6 276 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00228 611 SUPERFAMILY Protein kinase-like (PK-like) 250 547 IPR011009 -
Bma08g00228 611 Gene3D Transferase(Phosphotransferase) domain 1 352 567 - -
Bma08g00228 611 PANTHER OS03G0759600 PROTEIN 2 583 - -
Bma08g00228 611 Gene3D Phosphorylase Kinase; domain 1 242 351 - -
Bma08g00228 611 MobiDBLite consensus disorder prediction 223 244 - -
Bma08g00228 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Bma08g00228 611 PANTHER OS07G0166700 PROTEIN 2 583 IPR045272 GO:0004714|GO:0006468
Bma08g00228 611 Pfam Malectin-like domain 24 150 IPR024788 -
Bma08g00228 611 ProSitePatterns Protein kinases ATP-binding region signature. 282 304 IPR017441 GO:0005524
Bma08g00228 611 CDD STKc_IRAK 282 547 - -
Bma08g00228 611 Gene3D - 4 153 - -
Bma08g00228 611 Pfam Protein tyrosine and serine/threonine kinase 280 542 IPR001245 GO:0004672|GO:0006468
Bma08g00228 611 ProSiteProfiles Protein kinase domain profile. 276 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00562 Bma-Chr3:4676900 Bma08g00228 Bma-Chr8:2796119 0 dispersed
Bma08g00228 Bma-Chr8:2796119 Bma08g00788 Bma-Chr8:45273024 0 dispersed
Bma08g00228 Bma-Chr8:2796119 Bma08g00312 Bma-Chr8:4637473 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66655 PF07714 PK_Tyr_Ser-Thr 1.10E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00228 - - csv:101204351 889.026