Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00242 ATGGCAAAGACAGCGACACCTGGTGGAATTTTGACTATTCTGGCTAATCCATCGCCTGAGTCTTTATCGGCAGCTCCAGATATAGTGGTTCAGGTCCTCGATCTCAAAGCTGCCGGCAATCGGTACATGTTTACTGCCTGCGATGGAAATATGAGGTTGAAAGCTATTCTGCCTTCAAATCTCACTTCTGATGTGATCTCAGGGAAGATTCAGAGCTTAGGTCTTATTCGTATTCTTGACTATTCCCTCAATGACATTCCAAATAAGTCCGACAAGTATTTGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTGAAATGGAGATCAATAATATCGTCAAAAGTGAGGGATCTGGAATGTTACAGACATCGAAACTAGAAAATATCCGTGAGAGTGAAATGAAAGCAGAAAGGCCAGGCATTCTTCTAAAGCCAAAGCCAGAAATTTATACCAAATCAGCCGCTCAAATTGTACAAGAACAAAGATCAAACATGCCCCCAACTGCACGAATGGCAATGACAAGGAGAGTACATCCACTTCTTTCATTGAATCCTTACCAAGGCAATTGGACGATTAAAGTTCGTGTTACAAACAAGGAAGTTATGCGTAATTATAAGAACGCCAGGGGAGAAGGATGTGTCTTCAATGTGGAGTTAACTGACGATAACTTTATTCAACCTTTGTCGCAGGAAACCCAAATTCAGGCAACAATGTTTAATGAAGCTGCAAGAAAGTTCTATGATAAGTTTGAGCTTGGAAAGGTTTATTACATTTCCAAGGGAACTCTCAAGGTTGCCAACAAGAGATTCAGTACAGTGAAAAATGATTATGAAATGACTCTGAATGAGAATTCAGAGGTGGAAGAGGTCGCCAATGAAGCTATTTTTGTGCCCGACACAAAATTCAGTTTTGTCCCAATCGACATGTTGGGTCCCTACGTGCATGGAAAAGAACTCGTAGATGTCATTGGAGTTGTTCAGAATGTTTCTTCTACGATGAGTATTCGAAGGAAGATCGATAATGAAACTGCTCCAAAGCGTGATATAACTATTGCTGATGAGACGAAAAAAACAGTTGTGGTCTCTCTATGGCACGAGCTTGCAACTACTGTGGGACAAGAGTTGCTTGACAAAGCTGACCAATCGCCAGTCATCGCTATTAAATCTCTTAGAGTTGGAGATTTTCAAGGTGTATCTCTTTCATCAGTGAGCAGAAGTAAATTGCTGGTAAATCCAGACATACCTGAGGCAAGAAAGTTGAAATCCTGGTTTGATTCGGAAGGCAAACCAACATTCTTCAACATTAGAGCATACATCAGCTTCATCAAGCCTGACCAGACAATGTGGTACAGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCCATAGGTTCTGGATTCTGGTGTGAAAGTTGCCAGAAAAATGAGGAAGAATGCAGTTTAAGATATATTATGGTAGTAAGAGTTTCTGATGCCGGTGGTGAAGTCTATCTCTCTCTCTTCAATGAAGAGGCAGAAAAAATCATTGGGTGCTCAGCTGATGAGCTCGAACAAATGAAATCACAGATGGGTGAAGAGAATAATTCATATGAGATGAAACTGAAAGAGGCTACTTGGGTTCCTCATCTGCTGAGGATTAGCGTTTCTCAGAATGAATACAACAATGAGAAGAGGCAAAGGGTTACCGCCAAAGCAGTTGATGCTGTTGATTTTGCTTCTGAATCCAGATTTTTGCTTGAAGAAATATCAAAGATGAGGCTTTCAAGGTAA 1776 40.99 MAKTATPGGILTILANPSPESLSAAPDIVVQVLDLKAAGNRYMFTACDGNMRLKAILPSNLTSDVISGKIQSLGLIRILDYSLNDIPNKSDKYLIVTKCEVVSPALEMEINNIVKSEGSGMLQTSKLENIRESEMKAERPGILLKPKPEIYTKSAAQIVQEQRSNMPPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEVMRNYKNARGEGCVFNVELTDDNFIQPLSQETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKRFSTVKNDYEMTLNENSEVEEVANEAIFVPDTKFSFVPIDMLGPYVHGKELVDVIGVVQNVSSTMSIRRKIDNETAPKRDITIADETKKTVVVSLWHELATTVGQELLDKADQSPVIAIKSLRVGDFQGVSLSSVSRSKLLVNPDIPEARKLKSWFDSEGKPTFFNIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGFWCESCQKNEEECSLRYIMVVRVSDAGGEVYLSLFNEEAEKIIGCSADELEQMKSQMGEENNSYEMKLKEATWVPHLLRISVSQNEYNNEKRQRVTAKAVDAVDFASESRFLLEEISKMRLSR 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2989413 2992555 + Bma027253.1 Bma08g00242 87069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00242 591 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bma08g00242 591 CDD RPA1_DBD_B 320 426 - -
Bma08g00242 591 Gene3D - 314 415 IPR012340 -
Bma08g00242 591 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 431 - -
Bma08g00242 591 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 430 585 - -
Bma08g00242 591 SUPERFAMILY Nucleic acid-binding proteins 427 587 IPR012340 -
Bma08g00242 591 SUPERFAMILY Nucleic acid-binding proteins 303 431 IPR012340 -
Bma08g00242 591 Pfam OB-fold nucleic acid binding domain 191 284 IPR004365 GO:0003676
Bma08g00242 591 CDD RPA1_DBD_A 180 290 - -
Bma08g00242 591 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 430 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma08g00242 591 Pfam Replication factor-A C terminal domain 433 580 IPR013955 -
Bma08g00242 591 SUPERFAMILY Nucleic acid-binding proteins 178 293 IPR012340 -
Bma08g00242 591 PANTHER REPLICATION FACTOR A 1, RFA1 5 431 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma08g00242 591 PANTHER REPLICATION FACTOR A 1, RFA1 430 585 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma08g00242 591 Gene3D - 177 293 IPR012340 -
Bma08g00242 591 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bma08g00242 591 Gene3D - 416 587 IPR012340 -
Bma08g00242 591 Gene3D - 5 115 IPR012340 -
Bma08g00242 591 CDD RPA1_DBD_C 430 586 IPR013955 -
Bma08g00242 591 Coils Coil 515 535 - -
Bma08g00242 591 Pfam Replication protein A OB domain 318 412 IPR031657 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00242 Bma12g00964 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00242 Bma-Chr8:2989413 Bma12g00253 Bma-Chr12:3252412 1.54E-86 dispersed
Bma12g00964 Bma-Chr12:41612761 Bma08g00242 Bma-Chr8:2989413 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00242 K07466 - csv:101208545 844.728