Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00244 AAAATTATCATGAATTCAAAGGAAAAAAGCTTAAAAGCAAGGGAAGAGGGAGAAACCACCACAAACGAGTGGAAATTACCCAAGTTGTCGGCAACGAGTTCAAAATCATGGTCGGGATCGAGAAATCCGAGGATTGTGCGAGTTTCTCGAACGTTTGGAGGGAAAGATAGACATAGTAAAGTTTGTACAATCCGAGGATTGAGAGATAGGAGGATTAGACTTTCAGTTCCAACTGCAATTCAACTATATGATCTTCAAGACAGACTTGGTGTTAATCAACCAAGCAAGGTAATCGATTGGTTGATTACCGTCACGAAGCTTGATATCGATAAGCTCCCTCCTCTCCAACTGCCTCCCGGATACGGTCAATTCGACCGAGAAATTTGGGCTTCTCAAGATCATTCAGGTTCGTATTTTACCCACAGGTGTGACACTTTCGTTACGTTGATGCACGAATCAAAACATTATCATCTCCTTGAATTCTAA 486 41.56 KIIMNSKEKSLKAREEGETTTNEWKLPKLSATSSKSWSGSRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGVNQPSKVIDWLITVTKLDIDKLPPLQLPPGYGQFDREIWASQDHSGSYFTHRCDTFVTLMHESKHYHLLEF 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3055317 3055802 + Bma027256.1 Bma08g00244 87071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00244 161 MobiDBLite consensus disorder prediction 7 22 - -
Bma08g00244 161 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 132 IPR005333 GO:0003700
Bma08g00244 161 Pfam TCP family transcription factor 54 117 IPR017887 -
Bma08g00244 161 MobiDBLite consensus disorder prediction 1 25 - -
Bma08g00244 161 PANTHER TRANSCRIPTION FACTOR TCP17 4 132 - -
Bma08g00244 161 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00244 - - - gmx:100804574 179.489
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00019 Bma08g00244 CCT
Bma03g00857 Bma08g00244 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00857 Bma-Chr3:8234956 Bma08g00244 Bma-Chr8:3055317 1.82E-58 dispersed
Bma06g00019 Bma-Chr6:446399 Bma08g00244 Bma-Chr8:3055317 3.25E-55 dispersed
Bma08g00244 Bma-Chr8:3055317 Bma11g00905 Bma-Chr11:34981807 5.46E-28 dispersed
Bma01g01071 Bma-Chr1:11280842 Bma08g00244 Bma-Chr8:3055317 4.89E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g460 Blo04g00796 . . . Bpe12g00521 . Bma06g00019 . Cmo13g01114 . . Cma11g00212 Car10g00278 Car11g00191 Sed08g0281 Cpe20g00081 Cpe04g01456 Bhi02g00091 Tan09g2038 Cmetu07g0568 . Hepe09g0277 . . Cla06g01535 Cam06g1693 Cec06g1756 Cco06g1755 Clacu06g1661 Cmu06g1607 Cre06g2419 . . . . . Csa01g00607 Chy12g01493 Cme12g01933 . . Bda11g01762 Bda14g00885 . Bpe15g00574 Bma03g00857 Bma08g00244 Sed01g2290 Cmo10g00314 Cmo11g00214 Cma13g01069 . Car13g00905 . . Cpe18g00710 Bhi08g01077 Tan05g2351 Cmetu12g1931 Lac10g0172 Hepe07g2456 . . Cla04g01148 Cam04g1204 Cec01g1716 Cco01g1761 Clacu04g1231 Cmu04g1211 Cre01g1507 Lsi06g01407 Csa01g00299 Chy02g02437 Cme02g01824
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57725 PF03634 TCP 8.90E-25 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00244 Bma_Chr08 FPKM 3.705628 2.084956 2.116276 2.749038 9.322399 15.785142 7.853467 1.193372 0.04874 1.161822