Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00247 ATGATGTTGTGGGAGAGAGTCCAGCTACCCGTTAGACCATGGCAGGATGGAGCACTGCGGAAAGTTGGTGAGATATCCGGGCCAGGTAAGAGGTGGGGTCATACTTGCAACGCCGTCAAAGAAGGACGATATCTCTATGTCTTTGGAGGTTATGGAAAGGATAACCGTCAGACCAACCAAGTACATGTCTTCGACACTGCCAGACAAACATGGAGTGAGCCAGCGATAAAGGGCTTCCCGCCGACTCCAAGAGATAGTCACACTTGTACGACCATTGGTGTTAATCTTTTTATTTTTGGGGGCACAGATGGGACACGCCCTCTAAAAGATTTGCTTATATTGGATACTTCTTTGAATATATGGCTGCATCCAAGATTAAGAGGTGAGGGGCCCGAGGCACGAGAGGGTCATGGTGCTGCCCTTGTCGGAAAACAACTATTTATTTTTGGGGGATGCGGGAAATCTTCAAATAATGTTGAAGTATACTATAATGATCTTTATATTTTGGATACTGAGAAGTTTGTTTGGCAACGTGCTATAACATCGGGCATTCCACCTTCTCCCCGTGGCAGCCACACATGTTCATCTTGGAAAAATAAATTCATTGTGATTGGTGGGGAAGATGCTTATGATTGTTATTCGTCCGATGTTCACATTCTCGACACAGACACCCTAAATTGGATGGAGCTAAGCACTTCTGGACAAATGTTGTTGCCCCGAGCCGGTCACACGTCCATTGCCTTTGAAAAACATGTGTTTGTGTTTGGCGGTTTTTCAGACTCGCAAAATTTATACGACGACCTGTACATGCTTGATCTTGATACAAGTATTTGGACCAGGGTCCTAACCTCCGGCGATGGACCCTCTGCCAGATTTTCTGTGGCTGGGGCCTGTTTGATTCCCCAAAACTGTTGTGTTCTTGCATTTATCGGTGGTTGTGATAAAAGCCTCGAGGCACTGGATGATATGTATTTCTTAAACACAGGACTTGCCGGGGAAAAAGTATGGAAAGTACATAAGTTGTCTCTGAGGAAGCAATTGAAGTTAAAATGTCAAGAAGAGAATCAAAATTTTCAACGCGATAAAACTCTAATGGAATTTGGGATTATGCCAAATATATACCAGCCTAATGCAGGGTCATGTGGCCGTGATTTTGTGCCGAATCAATTGAACCATCCACATGGAATGAAGATGTTTCGAGCAAACATCACTGAAAACATCATAAATGGAGGATATATCATGGAAACTATCATTGATGGAAAACGTCTCCGTGGAATATTGTTTTCCAACAAGCCTAAGTATATTGACGTTGCCCACCATTCTAGTAGCAGAAAACGGACTTGCGGAGAAATTGGAAGTGATTTGTTGAATGGGGATCACAATTCAAAATCCAAGAGTTCTCGGGTCGTCAAGCTGGATCCCAGAAACGAGATACTAACGGTTGGCGTCCAAGAAAAAGCGTCCACTTCATATGAACCTCGGATGAACATTGCTCGTGATCTAGCACCTTCTATTCCTTCTCAGCCCCACAAGGTTAGATCATCCTATTCTTTTGTTGAACATGTCCCATAA 1572 43.77 MMLWERVQLPVRPWQDGALRKVGEISGPGKRWGHTCNAVKEGRYLYVFGGYGKDNRQTNQVHVFDTARQTWSEPAIKGFPPTPRDSHTCTTIGVNLFIFGGTDGTRPLKDLLILDTSLNIWLHPRLRGEGPEAREGHGAALVGKQLFIFGGCGKSSNNVEVYYNDLYILDTEKFVWQRAITSGIPPSPRGSHTCSSWKNKFIVIGGEDAYDCYSSDVHILDTDTLNWMELSTSGQMLLPRAGHTSIAFEKHVFVFGGFSDSQNLYDDLYMLDLDTSIWTRVLTSGDGPSARFSVAGACLIPQNCCVLAFIGGCDKSLEALDDMYFLNTGLAGEKVWKVHKLSLRKQLKLKCQEENQNFQRDKTLMEFGIMPNIYQPNAGSCGRDFVPNQLNHPHGMKMFRANITENIINGGYIMETIIDGKRLRGILFSNKPKYIDVAHHSSSRKRTCGEIGSDLLNGDHNSKSKSSRVVKLDPRNEILTVGVQEKASTSYEPRMNIARDLAPSIPSQPHKVRSSYSFVEHVP 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3064727 3068499 - Bma027259.1 Bma08g00247 87074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00247 523 Pfam Kelch motif 131 174 - -
Bma08g00247 523 Gene3D - 126 364 IPR015915 GO:0005515
Bma08g00247 523 Gene3D - 13 125 IPR015915 GO:0005515
Bma08g00247 523 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 25 465 - -
Bma08g00247 523 Pfam Galactose oxidase, central domain 239 289 - -
Bma08g00247 523 Pfam Galactose oxidase, central domain 42 92 - -
Bma08g00247 523 SUPERFAMILY Galactose oxidase, central domain 196 328 IPR011043 -
Bma08g00247 523 MobiDBLite consensus disorder prediction 502 523 - -
Bma08g00247 523 Pfam Kelch motif 188 231 IPR011498 GO:0005515
Bma08g00247 523 SUPERFAMILY Galactose oxidase, central domain 19 248 IPR011043 -
Bma08g00247 523 PANTHER KELCH REPEAT DOMAIN 25 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00247 - - - qsu:111998399 650.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00247 Bma12g00961 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01298 Bma-Chr2:55146069 Bma08g00247 Bma-Chr8:3064727 8.07E-07 dispersed
Bma08g00247 Bma-Chr8:3064727 Bma13g00631 Bma-Chr13:15157291 3.13E-24 dispersed
Bma05g00255 Bma-Chr5:7071034 Bma08g00247 Bma-Chr8:3064727 2.35E-28 transposed
Bma06g01132 Bma-Chr6:48226429 Bma08g00247 Bma-Chr8:3064727 1.26E-14 transposed
Bma12g01069 Bma-Chr12:42855041 Bma08g00247 Bma-Chr8:3064727 7.25E-11 wgd
Bma12g00961 Bma-Chr12:41587161 Bma08g00247 Bma-Chr8:3064727 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008147 2 4 2 2 2 0 2 0 0 1 0 0 2 1 1 2 0 1 1 0 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00247 Bma_Chr08 FPKM 9.050129 6.676151 6.928435 7.3865 10.52395 7.020127 10.099958 5.533742 3.830895 5.744291